Hb_084481_010

Information

Type -
Description -
Location Contig84481: 3069-3467
Sequence    

Annotation

kegg
ID pop:POPTR_0011s036602
description hypothetical protein
nr
ID XP_006377277.1
description hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FY67
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s036602g PE=4 SV=1
Gene Ontology
ID GO:0000166
description b-raf proto-oncogene serine threonine-protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084481_010 0.0 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
2 Hb_002236_040 0.1207696457 - - PREDICTED: cytochrome c [Jatropha curcas]
3 Hb_033501_010 0.1542901478 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
4 Hb_000175_540 0.160433256 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
5 Hb_002889_030 0.1607018663 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
6 Hb_000504_070 0.1622275199 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
7 Hb_109002_020 0.1659268305 - - PREDICTED: CTP synthase-like [Jatropha curcas]
8 Hb_006698_030 0.1667801452 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
9 Hb_002236_050 0.1692345864 - - -
10 Hb_119530_010 0.1706374797 - - -
11 Hb_003253_050 0.1731711737 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
12 Hb_000599_100 0.1734809988 - - hypothetical protein B456_001G254000 [Gossypium raimondii]
13 Hb_002311_340 0.1735282836 - - phospholipase d zeta, putative [Ricinus communis]
14 Hb_016522_010 0.174556876 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
15 Hb_003038_140 0.1746685072 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
16 Hb_001623_160 0.175804982 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
17 Hb_001726_110 0.1763304664 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
18 Hb_150360_020 0.1766773131 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
19 Hb_062007_010 0.1776506683 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
20 Hb_001322_040 0.1797473231 - - -

Gene co-expression network

sample Hb_084481_010 Hb_084481_010 Hb_002236_040 Hb_002236_040 Hb_084481_010--Hb_002236_040 Hb_033501_010 Hb_033501_010 Hb_084481_010--Hb_033501_010 Hb_000175_540 Hb_000175_540 Hb_084481_010--Hb_000175_540 Hb_002889_030 Hb_002889_030 Hb_084481_010--Hb_002889_030 Hb_000504_070 Hb_000504_070 Hb_084481_010--Hb_000504_070 Hb_109002_020 Hb_109002_020 Hb_084481_010--Hb_109002_020 Hb_006698_030 Hb_006698_030 Hb_002236_040--Hb_006698_030 Hb_000015_030 Hb_000015_030 Hb_002236_040--Hb_000015_030 Hb_008173_110 Hb_008173_110 Hb_002236_040--Hb_008173_110 Hb_003098_020 Hb_003098_020 Hb_002236_040--Hb_003098_020 Hb_001322_040 Hb_001322_040 Hb_002236_040--Hb_001322_040 Hb_033501_010--Hb_002889_030 Hb_003253_050 Hb_003253_050 Hb_033501_010--Hb_003253_050 Hb_119530_010 Hb_119530_010 Hb_033501_010--Hb_119530_010 Hb_000181_050 Hb_000181_050 Hb_033501_010--Hb_000181_050 Hb_003906_170 Hb_003906_170 Hb_033501_010--Hb_003906_170 Hb_002391_270 Hb_002391_270 Hb_033501_010--Hb_002391_270 Hb_001215_040 Hb_001215_040 Hb_000175_540--Hb_001215_040 Hb_000175_540--Hb_000504_070 Hb_004453_050 Hb_004453_050 Hb_000175_540--Hb_004453_050 Hb_028227_070 Hb_028227_070 Hb_000175_540--Hb_028227_070 Hb_000175_540--Hb_109002_020 Hb_000023_280 Hb_000023_280 Hb_000175_540--Hb_000023_280 Hb_002889_030--Hb_000181_050 Hb_002889_030--Hb_000504_070 Hb_000228_110 Hb_000228_110 Hb_002889_030--Hb_000228_110 Hb_003813_050 Hb_003813_050 Hb_002889_030--Hb_003813_050 Hb_019053_030 Hb_019053_030 Hb_002889_030--Hb_019053_030 Hb_000504_070--Hb_028227_070 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_109002_020--Hb_000504_070 Hb_004064_010 Hb_004064_010 Hb_109002_020--Hb_004064_010 Hb_000103_270 Hb_000103_270 Hb_109002_020--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_109002_020--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_109002_020--Hb_003266_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.67153 9.90572 3.9906 12.2944 0.771613 12.7995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.98304 15.0363 6.7081 25.3161 3.64186

CAGE analysis