Hb_031091_030

Information

Type -
Description -
Location Contig31091: 59378-65370
Sequence    

Annotation

kegg
ID vvi:104878732
description uncharacterized LOC104878732
nr
ID EEC81991.1
description hypothetical protein OsI_25921 [Oryza sativa Indica Group]
swissprot
ID -
description -
trembl
ID B8B5X3
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_25921 PE=4 SV=1
Gene Ontology
ID GO:0043170
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031091_030 0.0 - - hypothetical protein OsI_25921 [Oryza sativa Indica Group]
2 Hb_171554_040 0.1820508774 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
3 Hb_000619_030 0.1908675956 - - unnamed protein product [Vitis vinifera]
4 Hb_000484_010 0.1914599916 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
5 Hb_000094_080 0.1929696695 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
6 Hb_007313_040 0.1986346476 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
7 Hb_000167_120 0.2008659668 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
8 Hb_000392_160 0.2025553747 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
9 Hb_007012_040 0.207393801 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
10 Hb_004917_010 0.2084181738 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
11 Hb_002025_030 0.2094570827 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
12 Hb_012506_040 0.210262489 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
13 Hb_000154_130 0.2103096014 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
14 Hb_000417_200 0.2107743724 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
15 Hb_001408_120 0.2118315314 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_130016_010 0.2119157638 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000183_030 0.2123104413 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
18 Hb_004306_120 0.2126178935 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000635_060 0.2139070187 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
20 Hb_003517_070 0.2156815836 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]

Gene co-expression network

sample Hb_031091_030 Hb_031091_030 Hb_171554_040 Hb_171554_040 Hb_031091_030--Hb_171554_040 Hb_000619_030 Hb_000619_030 Hb_031091_030--Hb_000619_030 Hb_000484_010 Hb_000484_010 Hb_031091_030--Hb_000484_010 Hb_000094_080 Hb_000094_080 Hb_031091_030--Hb_000094_080 Hb_007313_040 Hb_007313_040 Hb_031091_030--Hb_007313_040 Hb_000167_120 Hb_000167_120 Hb_031091_030--Hb_000167_120 Hb_033799_010 Hb_033799_010 Hb_171554_040--Hb_033799_010 Hb_001124_050 Hb_001124_050 Hb_171554_040--Hb_001124_050 Hb_000574_530 Hb_000574_530 Hb_171554_040--Hb_000574_530 Hb_007012_040 Hb_007012_040 Hb_171554_040--Hb_007012_040 Hb_005408_030 Hb_005408_030 Hb_171554_040--Hb_005408_030 Hb_000170_100 Hb_000170_100 Hb_171554_040--Hb_000170_100 Hb_011021_050 Hb_011021_050 Hb_000619_030--Hb_011021_050 Hb_004306_120 Hb_004306_120 Hb_000619_030--Hb_004306_120 Hb_130016_010 Hb_130016_010 Hb_000619_030--Hb_130016_010 Hb_000154_130 Hb_000154_130 Hb_000619_030--Hb_000154_130 Hb_002609_080 Hb_002609_080 Hb_000619_030--Hb_002609_080 Hb_000619_030--Hb_007012_040 Hb_002025_030 Hb_002025_030 Hb_000484_010--Hb_002025_030 Hb_000183_030 Hb_000183_030 Hb_000484_010--Hb_000183_030 Hb_004917_010 Hb_004917_010 Hb_000484_010--Hb_004917_010 Hb_000484_010--Hb_002609_080 Hb_000392_160 Hb_000392_160 Hb_000484_010--Hb_000392_160 Hb_001377_100 Hb_001377_100 Hb_000484_010--Hb_001377_100 Hb_002943_010 Hb_002943_010 Hb_000094_080--Hb_002943_010 Hb_002817_060 Hb_002817_060 Hb_000094_080--Hb_002817_060 Hb_000809_020 Hb_000809_020 Hb_000094_080--Hb_000809_020 Hb_001393_010 Hb_001393_010 Hb_000094_080--Hb_001393_010 Hb_000094_080--Hb_004917_010 Hb_007897_030 Hb_007897_030 Hb_000094_080--Hb_007897_030 Hb_002311_130 Hb_002311_130 Hb_007313_040--Hb_002311_130 Hb_001998_150 Hb_001998_150 Hb_007313_040--Hb_001998_150 Hb_001473_170 Hb_001473_170 Hb_007313_040--Hb_001473_170 Hb_007313_040--Hb_000167_120 Hb_003517_070 Hb_003517_070 Hb_007313_040--Hb_003517_070 Hb_000025_500 Hb_000025_500 Hb_007313_040--Hb_000025_500 Hb_005181_050 Hb_005181_050 Hb_000167_120--Hb_005181_050 Hb_000844_050 Hb_000844_050 Hb_000167_120--Hb_000844_050 Hb_003124_270 Hb_003124_270 Hb_000167_120--Hb_003124_270 Hb_000167_120--Hb_000025_500 Hb_000167_120--Hb_001998_150 Hb_003680_020 Hb_003680_020 Hb_000167_120--Hb_003680_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0273961 0.189818 0.0509628 0.130116 0.0641667 0.040814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.118503 0.112054 0.141574 0.291312

CAGE analysis