Hb_011485_080

Information

Type -
Description -
Location Contig11485: 84612-86604
Sequence    

Annotation

kegg
ID rcu:RCOM_0178160
description 50S ribosomal protein L29, chloroplast precursor, putative
nr
ID XP_012088523.1
description PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
swissprot
ID Q9FJP3
description 50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1
trembl
ID A0A067LED0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24030 PE=3 SV=1
Gene Ontology
ID GO:0044434
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011485_080 0.0 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
2 Hb_001347_030 0.224900306 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000390_020 0.2311093425 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
4 Hb_173029_030 0.2332258908 - - conserved hypothetical protein [Ricinus communis]
5 Hb_103990_010 0.2369853074 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
6 Hb_000061_430 0.2375798084 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001536_020 0.2436930838 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
8 Hb_029432_010 0.2442189694 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_003605_120 0.2559493604 - - hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
10 Hb_005276_030 0.2582631314 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
11 Hb_000753_170 0.2588162621 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011033_010 0.2647668023 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_136441_010 0.2680674919 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
14 Hb_001246_040 0.270197657 - - hypothetical protein JCGZ_14673 [Jatropha curcas]
15 Hb_000056_030 0.2723454015 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
16 Hb_004093_030 0.275305014 - - hypothetical protein RCOM_1406750 [Ricinus communis]
17 Hb_188063_030 0.2766442484 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
18 Hb_002851_040 0.2770389755 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
19 Hb_011457_120 0.2777084966 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
20 Hb_010863_030 0.2801980868 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]

Gene co-expression network

sample Hb_011485_080 Hb_011485_080 Hb_001347_030 Hb_001347_030 Hb_011485_080--Hb_001347_030 Hb_000390_020 Hb_000390_020 Hb_011485_080--Hb_000390_020 Hb_173029_030 Hb_173029_030 Hb_011485_080--Hb_173029_030 Hb_103990_010 Hb_103990_010 Hb_011485_080--Hb_103990_010 Hb_000061_430 Hb_000061_430 Hb_011485_080--Hb_000061_430 Hb_001536_020 Hb_001536_020 Hb_011485_080--Hb_001536_020 Hb_000042_390 Hb_000042_390 Hb_001347_030--Hb_000042_390 Hb_001347_030--Hb_001536_020 Hb_010863_030 Hb_010863_030 Hb_001347_030--Hb_010863_030 Hb_001347_030--Hb_000061_430 Hb_029432_010 Hb_029432_010 Hb_001347_030--Hb_029432_010 Hb_007574_020 Hb_007574_020 Hb_001347_030--Hb_007574_020 Hb_000120_350 Hb_000120_350 Hb_000390_020--Hb_000120_350 Hb_001414_050 Hb_001414_050 Hb_000390_020--Hb_001414_050 Hb_000008_390 Hb_000008_390 Hb_000390_020--Hb_000008_390 Hb_000300_710 Hb_000300_710 Hb_000390_020--Hb_000300_710 Hb_006935_040 Hb_006935_040 Hb_000390_020--Hb_006935_040 Hb_011609_010 Hb_011609_010 Hb_000390_020--Hb_011609_010 Hb_173029_030--Hb_001536_020 Hb_001638_120 Hb_001638_120 Hb_173029_030--Hb_001638_120 Hb_022092_040 Hb_022092_040 Hb_173029_030--Hb_022092_040 Hb_000308_010 Hb_000308_010 Hb_173029_030--Hb_000308_010 Hb_173029_030--Hb_000042_390 Hb_008250_020 Hb_008250_020 Hb_173029_030--Hb_008250_020 Hb_000340_410 Hb_000340_410 Hb_103990_010--Hb_000340_410 Hb_027654_070 Hb_027654_070 Hb_103990_010--Hb_027654_070 Hb_007317_170 Hb_007317_170 Hb_103990_010--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_103990_010--Hb_000603_270 Hb_103990_010--Hb_001347_030 Hb_004447_050 Hb_004447_050 Hb_103990_010--Hb_004447_050 Hb_011033_010 Hb_011033_010 Hb_000061_430--Hb_011033_010 Hb_136441_010 Hb_136441_010 Hb_000061_430--Hb_136441_010 Hb_005890_020 Hb_005890_020 Hb_000061_430--Hb_005890_020 Hb_019973_010 Hb_019973_010 Hb_000061_430--Hb_019973_010 Hb_010288_030 Hb_010288_030 Hb_000061_430--Hb_010288_030 Hb_001536_020--Hb_000042_390 Hb_000753_170 Hb_000753_170 Hb_001536_020--Hb_000753_170 Hb_001536_020--Hb_010863_030 Hb_012653_010 Hb_012653_010 Hb_001536_020--Hb_012653_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.539812 0.169801 1.58037 0.748225 0.312583 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0265304 0.38575

CAGE analysis