Hb_010683_060

Information

Type -
Description -
Location Contig10683: 41714-42455
Sequence    

Annotation

kegg
ID cit:102609368
description DNA (cytosine-5)-methyltransferase CMT2-like
nr
ID KDO58824.1
description hypothetical protein CISIN_1g046469mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067EUJ0
description Cytosine-specific methyltransferase (Fragment) OS=Citrus sinensis GN=CISIN_1g046469mg PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna (cytosine-5)-methyltransferase cmt2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02101: 41742-42004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010683_060 0.0 - - hypothetical protein CISIN_1g046469mg, partial [Citrus sinensis]
2 Hb_000891_010 0.1470901935 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001386_150 0.1474964034 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_002997_110 0.1719468815 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
5 Hb_001141_350 0.1784950086 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
6 Hb_173660_010 0.1789790746 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
7 Hb_000917_200 0.1793769751 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
8 Hb_006478_050 0.1820897045 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
9 Hb_000748_110 0.1827325536 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
10 Hb_000076_090 0.1831697294 - - protein with unknown function [Ricinus communis]
11 Hb_004705_070 0.1834605152 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
12 Hb_000093_140 0.1836904625 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
13 Hb_003643_050 0.183996921 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
14 Hb_004411_050 0.1842446914 - - quinone oxidoreductase-like protein [Arabidopsis thaliana]
15 Hb_002609_290 0.1844988294 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
16 Hb_000215_230 0.1872212437 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
17 Hb_002107_040 0.1884001317 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
18 Hb_003020_070 0.1886638155 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
19 Hb_004117_370 0.18881717 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
20 Hb_002890_160 0.1898832114 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010683_060 Hb_010683_060 Hb_000891_010 Hb_000891_010 Hb_010683_060--Hb_000891_010 Hb_001386_150 Hb_001386_150 Hb_010683_060--Hb_001386_150 Hb_002997_110 Hb_002997_110 Hb_010683_060--Hb_002997_110 Hb_001141_350 Hb_001141_350 Hb_010683_060--Hb_001141_350 Hb_173660_010 Hb_173660_010 Hb_010683_060--Hb_173660_010 Hb_000917_200 Hb_000917_200 Hb_010683_060--Hb_000917_200 Hb_000922_160 Hb_000922_160 Hb_000891_010--Hb_000922_160 Hb_006478_050 Hb_006478_050 Hb_000891_010--Hb_006478_050 Hb_001775_120 Hb_001775_120 Hb_000891_010--Hb_001775_120 Hb_093077_010 Hb_093077_010 Hb_000891_010--Hb_093077_010 Hb_002890_160 Hb_002890_160 Hb_000891_010--Hb_002890_160 Hb_001936_190 Hb_001936_190 Hb_000891_010--Hb_001936_190 Hb_005050_050 Hb_005050_050 Hb_001386_150--Hb_005050_050 Hb_126933_010 Hb_126933_010 Hb_001386_150--Hb_126933_010 Hb_007101_270 Hb_007101_270 Hb_001386_150--Hb_007101_270 Hb_002107_040 Hb_002107_040 Hb_001386_150--Hb_002107_040 Hb_005976_090 Hb_005976_090 Hb_001386_150--Hb_005976_090 Hb_002609_290 Hb_002609_290 Hb_002997_110--Hb_002609_290 Hb_001863_340 Hb_001863_340 Hb_002997_110--Hb_001863_340 Hb_011381_070 Hb_011381_070 Hb_002997_110--Hb_011381_070 Hb_007224_010 Hb_007224_010 Hb_002997_110--Hb_007224_010 Hb_001386_020 Hb_001386_020 Hb_002997_110--Hb_001386_020 Hb_000035_490 Hb_000035_490 Hb_002997_110--Hb_000035_490 Hb_000836_090 Hb_000836_090 Hb_001141_350--Hb_000836_090 Hb_000062_130 Hb_000062_130 Hb_001141_350--Hb_000062_130 Hb_001141_350--Hb_001936_190 Hb_000645_260 Hb_000645_260 Hb_001141_350--Hb_000645_260 Hb_000181_330 Hb_000181_330 Hb_001141_350--Hb_000181_330 Hb_000465_020 Hb_000465_020 Hb_001141_350--Hb_000465_020 Hb_000934_260 Hb_000934_260 Hb_173660_010--Hb_000934_260 Hb_137600_010 Hb_137600_010 Hb_173660_010--Hb_137600_010 Hb_001689_050 Hb_001689_050 Hb_173660_010--Hb_001689_050 Hb_005074_050 Hb_005074_050 Hb_173660_010--Hb_005074_050 Hb_004208_090 Hb_004208_090 Hb_173660_010--Hb_004208_090 Hb_110252_010 Hb_110252_010 Hb_173660_010--Hb_110252_010 Hb_000917_200--Hb_006478_050 Hb_000062_050 Hb_000062_050 Hb_000917_200--Hb_000062_050 Hb_000917_200--Hb_093077_010 Hb_016687_010 Hb_016687_010 Hb_000917_200--Hb_016687_010 Hb_000917_200--Hb_000891_010 Hb_008878_020 Hb_008878_020 Hb_000917_200--Hb_008878_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.381464 1.45639 3.75078 1.21045 0.440564 0.070727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.430723 2.5777

CAGE analysis