Hb_002107_040

Information

Type -
Description -
Location Contig2107: 31612-32558
Sequence    

Annotation

kegg
ID rcu:RCOM_1598660
description ATP binding protein, putative
nr
ID XP_012073756.1
description PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
swissprot
ID Q9LDD1
description Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1
trembl
ID E6NTZ3
description JHL20J20.10 protein OS=Jatropha curcas GN=JHL20J20.10 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable boi-related e3 ubiquitin-protein ligase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_040 0.0 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
2 Hb_137600_010 0.1328535947 - - 50S ribosomal protein L1p, putative [Ricinus communis]
3 Hb_001227_140 0.1418350159 - - PREDICTED: protein ROS1 [Jatropha curcas]
4 Hb_005488_190 0.143427057 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_126933_020 0.1443970044 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
6 Hb_000479_210 0.1481261019 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
7 Hb_000679_080 0.1527310256 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
8 Hb_173660_010 0.1536269462 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
9 Hb_142663_020 0.1538973058 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_001999_260 0.1544094048 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
11 Hb_006583_030 0.1548448533 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
12 Hb_002811_250 0.1554638249 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
13 Hb_000834_060 0.1600639683 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_006681_020 0.1601604396 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
15 Hb_000891_010 0.1611033302 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003416_020 0.1611778564 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
17 Hb_000134_040 0.1619506658 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
18 Hb_004208_090 0.1625177698 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_003602_030 0.1637238685 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
20 Hb_005976_090 0.1637749128 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002107_040 Hb_002107_040 Hb_137600_010 Hb_137600_010 Hb_002107_040--Hb_137600_010 Hb_001227_140 Hb_001227_140 Hb_002107_040--Hb_001227_140 Hb_005488_190 Hb_005488_190 Hb_002107_040--Hb_005488_190 Hb_126933_020 Hb_126933_020 Hb_002107_040--Hb_126933_020 Hb_000479_210 Hb_000479_210 Hb_002107_040--Hb_000479_210 Hb_000679_080 Hb_000679_080 Hb_002107_040--Hb_000679_080 Hb_137600_010--Hb_000479_210 Hb_003602_030 Hb_003602_030 Hb_137600_010--Hb_003602_030 Hb_004324_120 Hb_004324_120 Hb_137600_010--Hb_004324_120 Hb_001999_260 Hb_001999_260 Hb_137600_010--Hb_001999_260 Hb_137600_010--Hb_005488_190 Hb_173660_010 Hb_173660_010 Hb_137600_010--Hb_173660_010 Hb_003915_020 Hb_003915_020 Hb_001227_140--Hb_003915_020 Hb_003141_060 Hb_003141_060 Hb_001227_140--Hb_003141_060 Hb_000948_120 Hb_000948_120 Hb_001227_140--Hb_000948_120 Hb_000940_030 Hb_000940_030 Hb_001227_140--Hb_000940_030 Hb_001365_030 Hb_001365_030 Hb_001227_140--Hb_001365_030 Hb_003055_070 Hb_003055_070 Hb_001227_140--Hb_003055_070 Hb_007803_040 Hb_007803_040 Hb_005488_190--Hb_007803_040 Hb_002811_250 Hb_002811_250 Hb_005488_190--Hb_002811_250 Hb_006681_020 Hb_006681_020 Hb_005488_190--Hb_006681_020 Hb_009393_130 Hb_009393_130 Hb_005488_190--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_005488_190--Hb_002495_090 Hb_000062_480 Hb_000062_480 Hb_005488_190--Hb_000062_480 Hb_004855_070 Hb_004855_070 Hb_126933_020--Hb_004855_070 Hb_003416_020 Hb_003416_020 Hb_126933_020--Hb_003416_020 Hb_126933_020--Hb_005488_190 Hb_150651_020 Hb_150651_020 Hb_126933_020--Hb_150651_020 Hb_004208_090 Hb_004208_090 Hb_126933_020--Hb_004208_090 Hb_126933_020--Hb_001365_030 Hb_000834_060 Hb_000834_060 Hb_000479_210--Hb_000834_060 Hb_003605_060 Hb_003605_060 Hb_000479_210--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000479_210--Hb_002485_050 Hb_074548_010 Hb_074548_010 Hb_000479_210--Hb_074548_010 Hb_000479_210--Hb_002811_250 Hb_005181_120 Hb_005181_120 Hb_000679_080--Hb_005181_120 Hb_000679_080--Hb_002811_250 Hb_010098_040 Hb_010098_040 Hb_000679_080--Hb_010098_040 Hb_000679_080--Hb_003416_020 Hb_000516_080 Hb_000516_080 Hb_000679_080--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_000679_080--Hb_007982_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235539 0.358043 1.76102 0.551792 0.0857044 0.0251463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0514448 0.0932554 0.187257 1.86313

CAGE analysis