Hb_009467_050

Information

Type -
Description -
Location Contig9467: 40619-42580
Sequence    

Annotation

kegg
ID rcu:RCOM_1515350
description interferon-induced GTP-binding protein mx, putative
nr
ID XP_002523968.1
description interferon-induced GTP-binding protein mx, putative [Ricinus communis]
swissprot
ID Q9ZP55
description Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1
trembl
ID B9SD99
description Interferon-induced GTP-binding protein mx, putative OS=Ricinus communis GN=RCOM_1515350 PE=4 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 4c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009467_050 0.0 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
2 Hb_006787_050 0.3067728971 - - hypothetical protein JCGZ_23988 [Jatropha curcas]
3 Hb_002374_120 0.3091639414 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
4 Hb_000366_010 0.3517856626 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like, partial [Pyrus x bretschneideri]
5 Hb_089419_010 0.366455901 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
6 Hb_000521_040 0.3685780066 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
7 Hb_103604_010 0.3687112004 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
8 Hb_003540_130 0.3693365036 - - -
9 Hb_002820_010 0.3693918998 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
10 Hb_000313_210 0.3720386081 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009491_040 0.3749227533 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
12 Hb_007483_110 0.3757049985 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like [Populus euphratica]
13 Hb_000684_240 0.3804858747 - - hypothetical protein RCOM_0819620 [Ricinus communis]
14 Hb_001190_090 0.381468229 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
15 Hb_006938_070 0.3900061776 - - PREDICTED: uncharacterized protein LOC104893877 [Beta vulgaris subsp. vulgaris]
16 Hb_000948_090 0.399504921 - - carbonic anhydrase, putative [Ricinus communis]
17 Hb_007021_010 0.4000745158 transcription factor TF Family: B3 hypothetical protein RCOM_0939100 [Ricinus communis]
18 Hb_132303_010 0.4007341818 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_003752_050 0.4022276789 - - hypothetical protein JCGZ_15078 [Jatropha curcas]
20 Hb_000208_120 0.4030084074 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009467_050 Hb_009467_050 Hb_006787_050 Hb_006787_050 Hb_009467_050--Hb_006787_050 Hb_002374_120 Hb_002374_120 Hb_009467_050--Hb_002374_120 Hb_000366_010 Hb_000366_010 Hb_009467_050--Hb_000366_010 Hb_089419_010 Hb_089419_010 Hb_009467_050--Hb_089419_010 Hb_000521_040 Hb_000521_040 Hb_009467_050--Hb_000521_040 Hb_103604_010 Hb_103604_010 Hb_009467_050--Hb_103604_010 Hb_000684_240 Hb_000684_240 Hb_006787_050--Hb_000684_240 Hb_000208_120 Hb_000208_120 Hb_006787_050--Hb_000208_120 Hb_000421_180 Hb_000421_180 Hb_006787_050--Hb_000421_180 Hb_000926_020 Hb_000926_020 Hb_006787_050--Hb_000926_020 Hb_000708_040 Hb_000708_040 Hb_006787_050--Hb_000708_040 Hb_001322_050 Hb_001322_050 Hb_006787_050--Hb_001322_050 Hb_002820_010 Hb_002820_010 Hb_002374_120--Hb_002820_010 Hb_003642_050 Hb_003642_050 Hb_002374_120--Hb_003642_050 Hb_000029_310 Hb_000029_310 Hb_002374_120--Hb_000029_310 Hb_002374_120--Hb_006787_050 Hb_000252_130 Hb_000252_130 Hb_002374_120--Hb_000252_130 Hb_030370_030 Hb_030370_030 Hb_002374_120--Hb_030370_030 Hb_000300_150 Hb_000300_150 Hb_000366_010--Hb_000300_150 Hb_004734_010 Hb_004734_010 Hb_000366_010--Hb_004734_010 Hb_000025_610 Hb_000025_610 Hb_000366_010--Hb_000025_610 Hb_003656_060 Hb_003656_060 Hb_000366_010--Hb_003656_060 Hb_004712_150 Hb_004712_150 Hb_000366_010--Hb_004712_150 Hb_000062_260 Hb_000062_260 Hb_000366_010--Hb_000062_260 Hb_000948_090 Hb_000948_090 Hb_089419_010--Hb_000948_090 Hb_000165_150 Hb_000165_150 Hb_089419_010--Hb_000165_150 Hb_001952_040 Hb_001952_040 Hb_089419_010--Hb_001952_040 Hb_139576_010 Hb_139576_010 Hb_089419_010--Hb_139576_010 Hb_003002_030 Hb_003002_030 Hb_089419_010--Hb_003002_030 Hb_166124_010 Hb_166124_010 Hb_089419_010--Hb_166124_010 Hb_009005_050 Hb_009005_050 Hb_000521_040--Hb_009005_050 Hb_004097_060 Hb_004097_060 Hb_000521_040--Hb_004097_060 Hb_001035_070 Hb_001035_070 Hb_000521_040--Hb_001035_070 Hb_005060_020 Hb_005060_020 Hb_000521_040--Hb_005060_020 Hb_003906_090 Hb_003906_090 Hb_000521_040--Hb_003906_090 Hb_000399_010 Hb_000399_010 Hb_000521_040--Hb_000399_010 Hb_012338_020 Hb_012338_020 Hb_103604_010--Hb_012338_020 Hb_001190_090 Hb_001190_090 Hb_103604_010--Hb_001190_090 Hb_007547_020 Hb_007547_020 Hb_103604_010--Hb_007547_020 Hb_002118_040 Hb_002118_040 Hb_103604_010--Hb_002118_040 Hb_001391_140 Hb_001391_140 Hb_103604_010--Hb_001391_140 Hb_000453_110 Hb_000453_110 Hb_103604_010--Hb_000453_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0934491 0 0.0172519 0 0 0.0203671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0394281 0.111853 0 0.0415414

CAGE analysis