Hb_000521_040

Information

Type -
Description -
Location Contig521: 25230-28211
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03140g
description POPTRDRAFT_776984; hypothetical protein
nr
ID XP_011041378.1
description PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
swissprot
ID Q08891
description Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2
trembl
ID B9IHM0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03140g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_040 0.0 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
2 Hb_009005_050 0.2947716667 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
3 Hb_004097_060 0.300392723 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001035_070 0.3231655597 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
5 Hb_005060_020 0.3231857479 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
6 Hb_003906_090 0.3309416174 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
7 Hb_000399_010 0.3311273255 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_008516_020 0.3337435046 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
9 Hb_101808_010 0.3376249102 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
10 Hb_000948_100 0.3386072418 - - -
11 Hb_029510_040 0.3394082722 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
12 Hb_001780_120 0.3398108888 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
13 Hb_000392_330 0.3440558632 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
14 Hb_000772_040 0.3444819816 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
15 Hb_012799_100 0.3456336598 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
16 Hb_001294_010 0.3492643476 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
17 Hb_000538_180 0.34936841 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
18 Hb_001189_050 0.3504680989 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
19 Hb_132303_010 0.3513891999 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_010757_010 0.3523721956 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_000521_040 Hb_000521_040 Hb_009005_050 Hb_009005_050 Hb_000521_040--Hb_009005_050 Hb_004097_060 Hb_004097_060 Hb_000521_040--Hb_004097_060 Hb_001035_070 Hb_001035_070 Hb_000521_040--Hb_001035_070 Hb_005060_020 Hb_005060_020 Hb_000521_040--Hb_005060_020 Hb_003906_090 Hb_003906_090 Hb_000521_040--Hb_003906_090 Hb_000399_010 Hb_000399_010 Hb_000521_040--Hb_000399_010 Hb_001195_360 Hb_001195_360 Hb_009005_050--Hb_001195_360 Hb_012799_100 Hb_012799_100 Hb_009005_050--Hb_012799_100 Hb_002205_130 Hb_002205_130 Hb_009005_050--Hb_002205_130 Hb_000130_110 Hb_000130_110 Hb_009005_050--Hb_000130_110 Hb_000856_150 Hb_000856_150 Hb_009005_050--Hb_000856_150 Hb_009005_050--Hb_005060_020 Hb_000634_040 Hb_000634_040 Hb_004097_060--Hb_000634_040 Hb_000066_100 Hb_000066_100 Hb_004097_060--Hb_000066_100 Hb_001251_080 Hb_001251_080 Hb_004097_060--Hb_001251_080 Hb_031718_010 Hb_031718_010 Hb_004097_060--Hb_031718_010 Hb_002221_040 Hb_002221_040 Hb_004097_060--Hb_002221_040 Hb_006738_020 Hb_006738_020 Hb_004097_060--Hb_006738_020 Hb_001053_150 Hb_001053_150 Hb_001035_070--Hb_001053_150 Hb_004429_070 Hb_004429_070 Hb_001035_070--Hb_004429_070 Hb_000141_030 Hb_000141_030 Hb_001035_070--Hb_000141_030 Hb_001277_090 Hb_001277_090 Hb_001035_070--Hb_001277_090 Hb_002078_480 Hb_002078_480 Hb_001035_070--Hb_002078_480 Hb_029510_040 Hb_029510_040 Hb_001035_070--Hb_029510_040 Hb_000010_410 Hb_000010_410 Hb_005060_020--Hb_000010_410 Hb_005060_020--Hb_029510_040 Hb_001189_050 Hb_001189_050 Hb_005060_020--Hb_001189_050 Hb_005060_020--Hb_001053_150 Hb_005060_020--Hb_012799_100 Hb_101808_010 Hb_101808_010 Hb_003906_090--Hb_101808_010 Hb_003906_090--Hb_001189_050 Hb_003906_090--Hb_029510_040 Hb_000019_060 Hb_000019_060 Hb_003906_090--Hb_000019_060 Hb_007645_080 Hb_007645_080 Hb_003906_090--Hb_007645_080 Hb_001357_010 Hb_001357_010 Hb_003906_090--Hb_001357_010 Hb_011484_010 Hb_011484_010 Hb_000399_010--Hb_011484_010 Hb_000772_040 Hb_000772_040 Hb_000399_010--Hb_000772_040 Hb_000283_080 Hb_000283_080 Hb_000399_010--Hb_000283_080 Hb_036311_020 Hb_036311_020 Hb_000399_010--Hb_036311_020 Hb_000399_010--Hb_003906_090 Hb_001523_020 Hb_001523_020 Hb_000399_010--Hb_001523_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0168108 0 0.0100622 0 0 0.0540876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0969363 0.182206 0.0290151 0.0507241

CAGE analysis