Hb_008221_130

Information

Type -
Description -
Location Contig8221: 57414-58361
Sequence    

Annotation

kegg
ID cit:102621950
description uncharacterized LOC102621950
nr
ID CAN77450.1
description hypothetical protein VITISV_016971 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C0G0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008221_130 0.0 - - hypothetical protein VITISV_016971 [Vitis vinifera]
2 Hb_131864_030 0.2697533355 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
3 Hb_000062_010 0.2946426826 - - Alpha-L-fucosidase 2 precursor, putative [Ricinus communis]
4 Hb_004994_130 0.2958150851 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
5 Hb_007879_010 0.2997816374 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
6 Hb_002942_090 0.3025505754 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
7 Hb_000101_220 0.3029771899 - - anthranilate synthase component I, putative [Ricinus communis]
8 Hb_001767_040 0.3031014974 - - dehydroascorbate reductase, putative [Ricinus communis]
9 Hb_001506_030 0.3057857053 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
10 Hb_001195_190 0.3132906666 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003494_010 0.3133302949 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
12 Hb_129459_010 0.3171363478 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
13 Hb_005016_180 0.3188217634 - - phosphoglycerate kinase, putative [Ricinus communis]
14 Hb_044653_010 0.3224402038 - - PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
15 Hb_002217_410 0.3246904667 - - hypothetical protein L484_027883 [Morus notabilis]
16 Hb_011161_030 0.3266514584 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
17 Hb_001501_040 0.3276172228 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
18 Hb_000104_070 0.3322329677 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
19 Hb_135569_010 0.3340194668 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
20 Hb_001031_060 0.3345857697 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_008221_130 Hb_008221_130 Hb_131864_030 Hb_131864_030 Hb_008221_130--Hb_131864_030 Hb_000062_010 Hb_000062_010 Hb_008221_130--Hb_000062_010 Hb_004994_130 Hb_004994_130 Hb_008221_130--Hb_004994_130 Hb_007879_010 Hb_007879_010 Hb_008221_130--Hb_007879_010 Hb_002942_090 Hb_002942_090 Hb_008221_130--Hb_002942_090 Hb_000101_220 Hb_000101_220 Hb_008221_130--Hb_000101_220 Hb_011609_040 Hb_011609_040 Hb_131864_030--Hb_011609_040 Hb_027472_130 Hb_027472_130 Hb_131864_030--Hb_027472_130 Hb_005883_070 Hb_005883_070 Hb_131864_030--Hb_005883_070 Hb_131864_030--Hb_002942_090 Hb_000058_050 Hb_000058_050 Hb_131864_030--Hb_000058_050 Hb_005675_060 Hb_005675_060 Hb_131864_030--Hb_005675_060 Hb_003226_080 Hb_003226_080 Hb_000062_010--Hb_003226_080 Hb_001059_090 Hb_001059_090 Hb_000062_010--Hb_001059_090 Hb_006545_020 Hb_006545_020 Hb_000062_010--Hb_006545_020 Hb_008380_010 Hb_008380_010 Hb_000062_010--Hb_008380_010 Hb_007951_120 Hb_007951_120 Hb_000062_010--Hb_007951_120 Hb_000109_130 Hb_000109_130 Hb_000062_010--Hb_000109_130 Hb_010315_070 Hb_010315_070 Hb_004994_130--Hb_010315_070 Hb_000181_410 Hb_000181_410 Hb_004994_130--Hb_000181_410 Hb_006230_040 Hb_006230_040 Hb_004994_130--Hb_006230_040 Hb_163508_010 Hb_163508_010 Hb_004994_130--Hb_163508_010 Hb_000189_390 Hb_000189_390 Hb_004994_130--Hb_000189_390 Hb_007603_020 Hb_007603_020 Hb_004994_130--Hb_007603_020 Hb_000668_120 Hb_000668_120 Hb_007879_010--Hb_000668_120 Hb_011224_090 Hb_011224_090 Hb_007879_010--Hb_011224_090 Hb_011161_030 Hb_011161_030 Hb_007879_010--Hb_011161_030 Hb_000172_490 Hb_000172_490 Hb_007879_010--Hb_000172_490 Hb_005016_180 Hb_005016_180 Hb_007879_010--Hb_005016_180 Hb_001138_030 Hb_001138_030 Hb_007879_010--Hb_001138_030 Hb_000997_150 Hb_000997_150 Hb_002942_090--Hb_000997_150 Hb_002942_090--Hb_000058_050 Hb_003026_030 Hb_003026_030 Hb_002942_090--Hb_003026_030 Hb_002400_230 Hb_002400_230 Hb_002942_090--Hb_002400_230 Hb_001269_310 Hb_001269_310 Hb_002942_090--Hb_001269_310 Hb_004223_110 Hb_004223_110 Hb_002942_090--Hb_004223_110 Hb_046198_020 Hb_046198_020 Hb_000101_220--Hb_046198_020 Hb_001195_190 Hb_001195_190 Hb_000101_220--Hb_001195_190 Hb_000101_220--Hb_010315_070 Hb_007137_060 Hb_007137_060 Hb_000101_220--Hb_007137_060 Hb_000905_150 Hb_000905_150 Hb_000101_220--Hb_000905_150 Hb_013394_060 Hb_013394_060 Hb_000101_220--Hb_013394_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.367291 0.677199 0.225465 0.578523 0.163525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.187787 0 0

CAGE analysis