Hb_006520_050

Information

Type -
Description -
Location Contig6520: 70406-71733
Sequence    

Annotation

kegg
ID rcu:RCOM_0788280
description hypothetical protein
nr
ID XP_002531117.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYP8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0788280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006520_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007576_070 0.1718723403 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
3 Hb_029622_030 0.1802966699 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_153553_040 0.1846813736 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
5 Hb_000663_080 0.1866323555 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
6 Hb_001571_030 0.190407288 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
7 Hb_000011_240 0.1917665549 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
8 Hb_000270_600 0.1927843292 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
9 Hb_006502_020 0.1934722803 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
10 Hb_012286_020 0.1965337523 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
11 Hb_015026_020 0.1966551698 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
12 Hb_000424_070 0.1977466139 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
13 Hb_000140_440 0.1984455896 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
14 Hb_005217_030 0.1998309992 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
15 Hb_004725_030 0.2005353275 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
16 Hb_001454_150 0.2024832649 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
17 Hb_001638_330 0.2033592041 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
18 Hb_001624_040 0.2044028341 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
19 Hb_000928_250 0.2059282413 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_002265_010 0.2061119832 - - ef-hand calcium binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006520_050 Hb_006520_050 Hb_007576_070 Hb_007576_070 Hb_006520_050--Hb_007576_070 Hb_029622_030 Hb_029622_030 Hb_006520_050--Hb_029622_030 Hb_153553_040 Hb_153553_040 Hb_006520_050--Hb_153553_040 Hb_000663_080 Hb_000663_080 Hb_006520_050--Hb_000663_080 Hb_001571_030 Hb_001571_030 Hb_006520_050--Hb_001571_030 Hb_000011_240 Hb_000011_240 Hb_006520_050--Hb_000011_240 Hb_000805_200 Hb_000805_200 Hb_007576_070--Hb_000805_200 Hb_000529_130 Hb_000529_130 Hb_007576_070--Hb_000529_130 Hb_007576_070--Hb_001571_030 Hb_003734_080 Hb_003734_080 Hb_007576_070--Hb_003734_080 Hb_000673_010 Hb_000673_010 Hb_007576_070--Hb_000673_010 Hb_001638_330 Hb_001638_330 Hb_007576_070--Hb_001638_330 Hb_015026_020 Hb_015026_020 Hb_029622_030--Hb_015026_020 Hb_000928_250 Hb_000928_250 Hb_029622_030--Hb_000928_250 Hb_000424_070 Hb_000424_070 Hb_029622_030--Hb_000424_070 Hb_003106_200 Hb_003106_200 Hb_029622_030--Hb_003106_200 Hb_000345_290 Hb_000345_290 Hb_029622_030--Hb_000345_290 Hb_000212_300 Hb_000212_300 Hb_029622_030--Hb_000212_300 Hb_000212_250 Hb_000212_250 Hb_153553_040--Hb_000212_250 Hb_000445_210 Hb_000445_210 Hb_153553_040--Hb_000445_210 Hb_000140_440 Hb_000140_440 Hb_153553_040--Hb_000140_440 Hb_005217_030 Hb_005217_030 Hb_153553_040--Hb_005217_030 Hb_007217_010 Hb_007217_010 Hb_153553_040--Hb_007217_010 Hb_011476_030 Hb_011476_030 Hb_153553_040--Hb_011476_030 Hb_006120_040 Hb_006120_040 Hb_000663_080--Hb_006120_040 Hb_000663_080--Hb_000011_240 Hb_000086_270 Hb_000086_270 Hb_000663_080--Hb_000086_270 Hb_000975_210 Hb_000975_210 Hb_000663_080--Hb_000975_210 Hb_006846_170 Hb_006846_170 Hb_000663_080--Hb_006846_170 Hb_003228_100 Hb_003228_100 Hb_000663_080--Hb_003228_100 Hb_003090_150 Hb_003090_150 Hb_001571_030--Hb_003090_150 Hb_001250_040 Hb_001250_040 Hb_001571_030--Hb_001250_040 Hb_001571_030--Hb_000805_200 Hb_027380_210 Hb_027380_210 Hb_001571_030--Hb_027380_210 Hb_000136_020 Hb_000136_020 Hb_001571_030--Hb_000136_020 Hb_000011_240--Hb_006120_040 Hb_001430_020 Hb_001430_020 Hb_000011_240--Hb_001430_020 Hb_000085_190 Hb_000085_190 Hb_000011_240--Hb_000085_190 Hb_102948_010 Hb_102948_010 Hb_000011_240--Hb_102948_010 Hb_000245_150 Hb_000245_150 Hb_000011_240--Hb_000245_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0919554 0.364622 0.9661 0.180066 0.124642 0.359576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0601978 0.0946771 0.258826 0.0382139 0.383222

CAGE analysis