Hb_005174_010

Information

Type -
Description -
Location Contig5174: 34-5153
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005174_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_010055_020 0.2418185923 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
3 Hb_012814_030 0.2472133524 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
4 Hb_002073_090 0.2509875065 - - PREDICTED: copper transporter 6-like [Jatropha curcas]
5 Hb_011457_080 0.2514817994 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
6 Hb_004108_120 0.2540604402 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
7 Hb_000120_200 0.2550559411 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
8 Hb_005054_320 0.2598501401 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
9 Hb_005240_010 0.2643343349 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
10 Hb_004007_210 0.2644929447 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
11 Hb_003126_010 0.2660373056 - - PREDICTED: oligopeptide transporter 7-like isoform X1 [Malus domestica]
12 Hb_004884_210 0.2671790011 - - PREDICTED: mitoferrin-like [Jatropha curcas]
13 Hb_003579_010 0.2694970933 - - cryptochrome 1.2 [Populus tremula]
14 Hb_000002_090 0.2700195285 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
15 Hb_003106_250 0.2712717133 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
16 Hb_000879_240 0.2712952311 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631008 [Jatropha curcas]
17 Hb_181402_010 0.2720050675 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
18 Hb_171900_110 0.2723599876 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
19 Hb_010180_050 0.272747293 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
20 Hb_002395_020 0.2728908285 - - Protein CREG1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005174_010 Hb_005174_010 Hb_010055_020 Hb_010055_020 Hb_005174_010--Hb_010055_020 Hb_012814_030 Hb_012814_030 Hb_005174_010--Hb_012814_030 Hb_002073_090 Hb_002073_090 Hb_005174_010--Hb_002073_090 Hb_011457_080 Hb_011457_080 Hb_005174_010--Hb_011457_080 Hb_004108_120 Hb_004108_120 Hb_005174_010--Hb_004108_120 Hb_000120_200 Hb_000120_200 Hb_005174_010--Hb_000120_200 Hb_000363_050 Hb_000363_050 Hb_010055_020--Hb_000363_050 Hb_000002_090 Hb_000002_090 Hb_010055_020--Hb_000002_090 Hb_002871_170 Hb_002871_170 Hb_010055_020--Hb_002871_170 Hb_005054_320 Hb_005054_320 Hb_010055_020--Hb_005054_320 Hb_034013_010 Hb_034013_010 Hb_010055_020--Hb_034013_010 Hb_004884_210 Hb_004884_210 Hb_010055_020--Hb_004884_210 Hb_004218_080 Hb_004218_080 Hb_012814_030--Hb_004218_080 Hb_002030_100 Hb_002030_100 Hb_012814_030--Hb_002030_100 Hb_073171_050 Hb_073171_050 Hb_012814_030--Hb_073171_050 Hb_007193_030 Hb_007193_030 Hb_012814_030--Hb_007193_030 Hb_004109_150 Hb_004109_150 Hb_012814_030--Hb_004109_150 Hb_002999_130 Hb_002999_130 Hb_012814_030--Hb_002999_130 Hb_006717_010 Hb_006717_010 Hb_002073_090--Hb_006717_010 Hb_000230_470 Hb_000230_470 Hb_002073_090--Hb_000230_470 Hb_000170_160 Hb_000170_160 Hb_002073_090--Hb_000170_160 Hb_003106_240 Hb_003106_240 Hb_002073_090--Hb_003106_240 Hb_000753_120 Hb_000753_120 Hb_002073_090--Hb_000753_120 Hb_011310_150 Hb_011310_150 Hb_002073_090--Hb_011310_150 Hb_011457_080--Hb_003106_240 Hb_000156_080 Hb_000156_080 Hb_011457_080--Hb_000156_080 Hb_010180_050 Hb_010180_050 Hb_011457_080--Hb_010180_050 Hb_027402_100 Hb_027402_100 Hb_011457_080--Hb_027402_100 Hb_028285_020 Hb_028285_020 Hb_011457_080--Hb_028285_020 Hb_011457_080--Hb_004218_080 Hb_004108_120--Hb_028285_020 Hb_001771_060 Hb_001771_060 Hb_004108_120--Hb_001771_060 Hb_004108_120--Hb_002999_130 Hb_019026_040 Hb_019026_040 Hb_004108_120--Hb_019026_040 Hb_152414_010 Hb_152414_010 Hb_004108_120--Hb_152414_010 Hb_004108_120--Hb_073171_050 Hb_129230_010 Hb_129230_010 Hb_000120_200--Hb_129230_010 Hb_000179_060 Hb_000179_060 Hb_000120_200--Hb_000179_060 Hb_000015_230 Hb_000015_230 Hb_000120_200--Hb_000015_230 Hb_003073_040 Hb_003073_040 Hb_000120_200--Hb_003073_040 Hb_000201_010 Hb_000201_010 Hb_000120_200--Hb_000201_010 Hb_001948_090 Hb_001948_090 Hb_000120_200--Hb_001948_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00543918 0.0707001 0.0203252 0.0149622 0 0.00974189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00970038 0 0 0.0622514

CAGE analysis