Hb_129230_010

Information

Type -
Description -
Location Contig129230: 5877-7276
Sequence    

Annotation

kegg
ID rcu:RCOM_1080770
description hypothetical protein
nr
ID XP_009758904.1
description PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
swissprot
ID D9UBG0
description Inactive protein RESTRICTED TEV MOVEMENT 1 OS=Arabidopsis thaliana GN=RTM1 PE=3 SV=1
trembl
ID B9RMG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129230_010 0.0 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
2 Hb_010050_040 0.1647474093 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
3 Hb_002785_010 0.2110520001 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
4 Hb_000120_200 0.2129075138 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
5 Hb_000656_030 0.2150560484 - - conserved hypothetical protein [Ricinus communis]
6 Hb_034507_050 0.2195640922 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
7 Hb_000015_230 0.2250735254 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
8 Hb_006717_010 0.227300327 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
9 Hb_005588_130 0.2274796824 - - conserved hypothetical protein [Ricinus communis]
10 Hb_032202_010 0.2314309678 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
11 Hb_000753_150 0.2319130628 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
12 Hb_005183_030 0.2341412712 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
13 Hb_000042_060 0.2346128311 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
14 Hb_005725_160 0.2393575001 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
15 Hb_003579_010 0.2396831625 - - cryptochrome 1.2 [Populus tremula]
16 Hb_000369_040 0.2397111235 - - Ankyrin repeat family protein, putative [Theobroma cacao]
17 Hb_000589_420 0.2402170791 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
18 Hb_001195_250 0.2426174544 - - lrr receptor protein kinase, putative [Ricinus communis]
19 Hb_002559_030 0.2438130132 - - oxidoreductase, putative [Ricinus communis]
20 Hb_000567_240 0.2441169339 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]

Gene co-expression network

sample Hb_129230_010 Hb_129230_010 Hb_010050_040 Hb_010050_040 Hb_129230_010--Hb_010050_040 Hb_002785_010 Hb_002785_010 Hb_129230_010--Hb_002785_010 Hb_000120_200 Hb_000120_200 Hb_129230_010--Hb_000120_200 Hb_000656_030 Hb_000656_030 Hb_129230_010--Hb_000656_030 Hb_034507_050 Hb_034507_050 Hb_129230_010--Hb_034507_050 Hb_000015_230 Hb_000015_230 Hb_129230_010--Hb_000015_230 Hb_000179_060 Hb_000179_060 Hb_010050_040--Hb_000179_060 Hb_010050_040--Hb_002785_010 Hb_000752_040 Hb_000752_040 Hb_010050_040--Hb_000752_040 Hb_005725_160 Hb_005725_160 Hb_010050_040--Hb_005725_160 Hb_003008_020 Hb_003008_020 Hb_010050_040--Hb_003008_020 Hb_003050_330 Hb_003050_330 Hb_002785_010--Hb_003050_330 Hb_032202_010 Hb_032202_010 Hb_002785_010--Hb_032202_010 Hb_000369_040 Hb_000369_040 Hb_002785_010--Hb_000369_040 Hb_001158_250 Hb_001158_250 Hb_002785_010--Hb_001158_250 Hb_002785_010--Hb_000752_040 Hb_007666_010 Hb_007666_010 Hb_002785_010--Hb_007666_010 Hb_000120_200--Hb_000179_060 Hb_000120_200--Hb_000015_230 Hb_003073_040 Hb_003073_040 Hb_000120_200--Hb_003073_040 Hb_000201_010 Hb_000201_010 Hb_000120_200--Hb_000201_010 Hb_001948_090 Hb_001948_090 Hb_000120_200--Hb_001948_090 Hb_000103_410 Hb_000103_410 Hb_000656_030--Hb_000103_410 Hb_006717_010 Hb_006717_010 Hb_000656_030--Hb_006717_010 Hb_001195_250 Hb_001195_250 Hb_000656_030--Hb_001195_250 Hb_000215_230 Hb_000215_230 Hb_000656_030--Hb_000215_230 Hb_000042_060 Hb_000042_060 Hb_000656_030--Hb_000042_060 Hb_004032_490 Hb_004032_490 Hb_000656_030--Hb_004032_490 Hb_000056_110 Hb_000056_110 Hb_034507_050--Hb_000056_110 Hb_010174_100 Hb_010174_100 Hb_034507_050--Hb_010174_100 Hb_000787_210 Hb_000787_210 Hb_034507_050--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_034507_050--Hb_024066_040 Hb_001252_030 Hb_001252_030 Hb_034507_050--Hb_001252_030 Hb_000103_230 Hb_000103_230 Hb_034507_050--Hb_000103_230 Hb_132259_010 Hb_132259_010 Hb_000015_230--Hb_132259_010 Hb_115114_010 Hb_115114_010 Hb_000015_230--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_000015_230--Hb_000325_070 Hb_000015_230--Hb_003073_040 Hb_000813_090 Hb_000813_090 Hb_000015_230--Hb_000813_090 Hb_000140_220 Hb_000140_220 Hb_000015_230--Hb_000140_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0487899 0.483 0.114326 0.422068 0.0982785 0.0436002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.682105

CAGE analysis