Hb_004032_490

Information

Type -
Description -
Location Contig4032: 435142-436608
Sequence    

Annotation

kegg
ID vvi:100853401
description uncharacterized LOC100853401
nr
ID XP_010651705.1
description PREDICTED: uncharacterized protein LOC100853401 [Vitis vinifera]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5B6A5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041904 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC100853401

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_490 0.0 - - PREDICTED: uncharacterized protein LOC100853401 [Vitis vinifera]
2 Hb_027337_060 0.0640249651 - - -
3 Hb_002344_080 0.1592538523 - - PREDICTED: protein YLS2-like [Populus euphratica]
4 Hb_000816_160 0.1626427508 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
5 Hb_001689_030 0.1650801908 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
6 Hb_000103_410 0.1928724682 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
7 Hb_000230_450 0.1939304756 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000025_590 0.2003791111 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
9 Hb_000656_030 0.2020710155 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002893_190 0.2037703893 - - unnamed protein product [Coffea canephora]
11 Hb_000181_230 0.2051484283 - - copper ion binding protein, putative [Ricinus communis]
12 Hb_002809_120 0.2059838483 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
13 Hb_006970_170 0.2087458156 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_000689_010 0.2087888568 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
15 Hb_000215_290 0.2089615537 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
16 Hb_032695_010 0.2091095192 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
17 Hb_007747_100 0.2106601623 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
18 Hb_000027_230 0.2115094364 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_000500_230 0.2121640526 - - hypothetical protein RCOM_0634810 [Ricinus communis]
20 Hb_143629_200 0.2123590566 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]

Gene co-expression network

sample Hb_004032_490 Hb_004032_490 Hb_027337_060 Hb_027337_060 Hb_004032_490--Hb_027337_060 Hb_002344_080 Hb_002344_080 Hb_004032_490--Hb_002344_080 Hb_000816_160 Hb_000816_160 Hb_004032_490--Hb_000816_160 Hb_001689_030 Hb_001689_030 Hb_004032_490--Hb_001689_030 Hb_000103_410 Hb_000103_410 Hb_004032_490--Hb_000103_410 Hb_000230_450 Hb_000230_450 Hb_004032_490--Hb_000230_450 Hb_027337_060--Hb_002344_080 Hb_027337_060--Hb_000816_160 Hb_027337_060--Hb_001689_030 Hb_002893_190 Hb_002893_190 Hb_027337_060--Hb_002893_190 Hb_000181_230 Hb_000181_230 Hb_027337_060--Hb_000181_230 Hb_002344_080--Hb_001689_030 Hb_002344_080--Hb_000816_160 Hb_003177_090 Hb_003177_090 Hb_002344_080--Hb_003177_090 Hb_002344_080--Hb_000181_230 Hb_143629_200 Hb_143629_200 Hb_002344_080--Hb_143629_200 Hb_002344_080--Hb_000103_410 Hb_000816_160--Hb_001689_030 Hb_000363_050 Hb_000363_050 Hb_000816_160--Hb_000363_050 Hb_003077_140 Hb_003077_140 Hb_000816_160--Hb_003077_140 Hb_003007_030 Hb_003007_030 Hb_000816_160--Hb_003007_030 Hb_004605_020 Hb_004605_020 Hb_000816_160--Hb_004605_020 Hb_001689_030--Hb_003177_090 Hb_001689_030--Hb_000103_410 Hb_002888_040 Hb_002888_040 Hb_001689_030--Hb_002888_040 Hb_001689_030--Hb_003007_030 Hb_001195_250 Hb_001195_250 Hb_000103_410--Hb_001195_250 Hb_000103_410--Hb_003177_090 Hb_025045_010 Hb_025045_010 Hb_000103_410--Hb_025045_010 Hb_002809_120 Hb_002809_120 Hb_000103_410--Hb_002809_120 Hb_001486_100 Hb_001486_100 Hb_000230_450--Hb_001486_100 Hb_000429_160 Hb_000429_160 Hb_000230_450--Hb_000429_160 Hb_031862_120 Hb_031862_120 Hb_000230_450--Hb_031862_120 Hb_143871_010 Hb_143871_010 Hb_000230_450--Hb_143871_010 Hb_000326_080 Hb_000326_080 Hb_000230_450--Hb_000326_080 Hb_000363_250 Hb_000363_250 Hb_000230_450--Hb_000363_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0349329 0.0314008 0.0310797 0.0140896 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0201294 0.0526843

CAGE analysis