Hb_027337_060

Information

Type -
Description -
Location Contig27337: 43521-43958
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027337_060 0.0 - - -
2 Hb_004032_490 0.0640249651 - - PREDICTED: uncharacterized protein LOC100853401 [Vitis vinifera]
3 Hb_002344_080 0.1575364125 - - PREDICTED: protein YLS2-like [Populus euphratica]
4 Hb_000816_160 0.1689963939 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
5 Hb_001689_030 0.1724751872 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
6 Hb_002893_190 0.1856394596 - - unnamed protein product [Coffea canephora]
7 Hb_000181_230 0.1942297456 - - copper ion binding protein, putative [Ricinus communis]
8 Hb_000438_020 0.1981811417 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
9 Hb_002078_240 0.20078969 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
10 Hb_000107_550 0.2047461205 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
11 Hb_000230_450 0.2055307027 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001706_020 0.2057620072 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
13 Hb_003177_090 0.2067284533 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
14 Hb_003702_070 0.2077937426 - - unnamed protein product [Vitis vinifera]
15 Hb_143629_200 0.2078731143 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
16 Hb_000472_020 0.2087385864 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
17 Hb_000103_410 0.2115418804 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
18 Hb_000215_290 0.2115629709 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
19 Hb_001174_030 0.2122260784 - - unnamed protein product [Vitis vinifera]
20 Hb_000834_100 0.2138854432 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]

Gene co-expression network

sample Hb_027337_060 Hb_027337_060 Hb_004032_490 Hb_004032_490 Hb_027337_060--Hb_004032_490 Hb_002344_080 Hb_002344_080 Hb_027337_060--Hb_002344_080 Hb_000816_160 Hb_000816_160 Hb_027337_060--Hb_000816_160 Hb_001689_030 Hb_001689_030 Hb_027337_060--Hb_001689_030 Hb_002893_190 Hb_002893_190 Hb_027337_060--Hb_002893_190 Hb_000181_230 Hb_000181_230 Hb_027337_060--Hb_000181_230 Hb_004032_490--Hb_002344_080 Hb_004032_490--Hb_000816_160 Hb_004032_490--Hb_001689_030 Hb_000103_410 Hb_000103_410 Hb_004032_490--Hb_000103_410 Hb_000230_450 Hb_000230_450 Hb_004032_490--Hb_000230_450 Hb_002344_080--Hb_001689_030 Hb_002344_080--Hb_000816_160 Hb_003177_090 Hb_003177_090 Hb_002344_080--Hb_003177_090 Hb_002344_080--Hb_000181_230 Hb_143629_200 Hb_143629_200 Hb_002344_080--Hb_143629_200 Hb_002344_080--Hb_000103_410 Hb_000816_160--Hb_001689_030 Hb_000363_050 Hb_000363_050 Hb_000816_160--Hb_000363_050 Hb_003077_140 Hb_003077_140 Hb_000816_160--Hb_003077_140 Hb_003007_030 Hb_003007_030 Hb_000816_160--Hb_003007_030 Hb_004605_020 Hb_004605_020 Hb_000816_160--Hb_004605_020 Hb_001689_030--Hb_003177_090 Hb_001689_030--Hb_000103_410 Hb_002888_040 Hb_002888_040 Hb_001689_030--Hb_002888_040 Hb_001689_030--Hb_003007_030 Hb_003106_110 Hb_003106_110 Hb_002893_190--Hb_003106_110 Hb_015306_010 Hb_015306_010 Hb_002893_190--Hb_015306_010 Hb_001689_070 Hb_001689_070 Hb_002893_190--Hb_001689_070 Hb_006469_090 Hb_006469_090 Hb_002893_190--Hb_006469_090 Hb_012033_010 Hb_012033_010 Hb_002893_190--Hb_012033_010 Hb_002811_020 Hb_002811_020 Hb_002893_190--Hb_002811_020 Hb_005724_040 Hb_005724_040 Hb_000181_230--Hb_005724_040 Hb_007483_120 Hb_007483_120 Hb_000181_230--Hb_007483_120 Hb_002740_100 Hb_002740_100 Hb_000181_230--Hb_002740_100 Hb_002099_060 Hb_002099_060 Hb_000181_230--Hb_002099_060 Hb_002685_160 Hb_002685_160 Hb_000181_230--Hb_002685_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.281028 0.215373 0.301185 0.119905 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.215609 0.384706

CAGE analysis