Hb_000120_200

Information

Type -
Description -
Location Contig120: 124220-129057
Sequence    

Annotation

kegg
ID rcu:RCOM_0612660
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012068631.1
description PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
swissprot
ID O22588
description Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1
trembl
ID A0A067LDJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08449 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable leucine-rich repeat receptor-like protein kinase at1g68400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06074: 128540-129013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_200 0.0 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
2 Hb_129230_010 0.2129075138 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
3 Hb_000179_060 0.2146146056 - - hypothetical protein POPTR_0010s23130g, partial [Populus trichocarpa]
4 Hb_000015_230 0.2154658585 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
5 Hb_003073_040 0.2198936644 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
6 Hb_000201_010 0.2276339599 - - unnamed protein product [Vitis vinifera]
7 Hb_001948_090 0.2328385439 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
8 Hb_003579_010 0.2329727367 - - cryptochrome 1.2 [Populus tremula]
9 Hb_158189_010 0.2336857538 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
10 Hb_000270_250 0.233807921 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
11 Hb_006717_010 0.2343564228 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
12 Hb_032202_010 0.2387205509 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
13 Hb_001147_030 0.2388143172 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
14 Hb_002006_060 0.2388549424 - - PREDICTED: oleosin 1-like [Jatropha curcas]
15 Hb_000369_040 0.240042145 - - Ankyrin repeat family protein, putative [Theobroma cacao]
16 Hb_002193_080 0.2425799556 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
17 Hb_000753_150 0.2449874185 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
18 Hb_000140_220 0.2451170525 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
19 Hb_000061_440 0.2451273451 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_003050_330 0.2451369634 - - hypothetical protein JCGZ_04591 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_200 Hb_000120_200 Hb_129230_010 Hb_129230_010 Hb_000120_200--Hb_129230_010 Hb_000179_060 Hb_000179_060 Hb_000120_200--Hb_000179_060 Hb_000015_230 Hb_000015_230 Hb_000120_200--Hb_000015_230 Hb_003073_040 Hb_003073_040 Hb_000120_200--Hb_003073_040 Hb_000201_010 Hb_000201_010 Hb_000120_200--Hb_000201_010 Hb_001948_090 Hb_001948_090 Hb_000120_200--Hb_001948_090 Hb_010050_040 Hb_010050_040 Hb_129230_010--Hb_010050_040 Hb_002785_010 Hb_002785_010 Hb_129230_010--Hb_002785_010 Hb_000656_030 Hb_000656_030 Hb_129230_010--Hb_000656_030 Hb_034507_050 Hb_034507_050 Hb_129230_010--Hb_034507_050 Hb_129230_010--Hb_000015_230 Hb_000179_060--Hb_000201_010 Hb_000258_230 Hb_000258_230 Hb_000179_060--Hb_000258_230 Hb_002043_070 Hb_002043_070 Hb_000179_060--Hb_002043_070 Hb_009771_040 Hb_009771_040 Hb_000179_060--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000179_060--Hb_002250_140 Hb_005211_210 Hb_005211_210 Hb_000179_060--Hb_005211_210 Hb_132259_010 Hb_132259_010 Hb_000015_230--Hb_132259_010 Hb_115114_010 Hb_115114_010 Hb_000015_230--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_000015_230--Hb_000325_070 Hb_000015_230--Hb_003073_040 Hb_000813_090 Hb_000813_090 Hb_000015_230--Hb_000813_090 Hb_000140_220 Hb_000140_220 Hb_000015_230--Hb_000140_220 Hb_003073_040--Hb_000140_220 Hb_003073_040--Hb_132259_010 Hb_003073_040--Hb_115114_010 Hb_000270_250 Hb_000270_250 Hb_003073_040--Hb_000270_250 Hb_002030_100 Hb_002030_100 Hb_003073_040--Hb_002030_100 Hb_000201_010--Hb_005211_210 Hb_008689_010 Hb_008689_010 Hb_000201_010--Hb_008689_010 Hb_000201_010--Hb_000258_230 Hb_002193_080 Hb_002193_080 Hb_000201_010--Hb_002193_080 Hb_000201_010--Hb_002043_070 Hb_003050_330 Hb_003050_330 Hb_000201_010--Hb_003050_330 Hb_001141_060 Hb_001141_060 Hb_001948_090--Hb_001141_060 Hb_000320_270 Hb_000320_270 Hb_001948_090--Hb_000320_270 Hb_003912_080 Hb_003912_080 Hb_001948_090--Hb_003912_080 Hb_000230_470 Hb_000230_470 Hb_001948_090--Hb_000230_470 Hb_005408_100 Hb_005408_100 Hb_001948_090--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_001948_090--Hb_000753_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0106433 0.107725 0.0519682 0.101126 0 0.0319505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.130221

CAGE analysis