Hb_012814_030

Information

Type -
Description -
Location Contig12814: 102523-103323
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13210g
description zinc finger family protein
nr
ID XP_012088296.1
description PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
swissprot
ID Q6R567
description E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1
trembl
ID A0A067JX84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rma1h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08693: 102436-105949
cDNA
(Sanger)
(ID:Location)		 002_I05.ab1: 102763-105951

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012814_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
2 Hb_004218_080 0.1355723142 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
3 Hb_002030_100 0.1397632674 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
4 Hb_073171_050 0.1436590184 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
5 Hb_007193_030 0.1476670078 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
6 Hb_004109_150 0.1490576603 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
7 Hb_002999_130 0.1497600294 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
8 Hb_000156_080 0.1527455418 - - Potassium channel KAT2, putative [Ricinus communis]
9 Hb_010180_050 0.1539526916 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
10 Hb_004108_120 0.1555010399 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
11 Hb_000656_260 0.1593828848 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
12 Hb_001141_060 0.1620068726 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
13 Hb_028285_020 0.1637168787 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
14 Hb_011457_080 0.1639346634 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
15 Hb_003106_240 0.1653447711 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
16 Hb_001660_130 0.1663180779 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
17 Hb_005054_320 0.1679367705 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
18 Hb_004907_070 0.1692207864 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
19 Hb_012799_040 0.1703115153 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
20 Hb_001369_020 0.171327545 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]

Gene co-expression network

sample Hb_012814_030 Hb_012814_030 Hb_004218_080 Hb_004218_080 Hb_012814_030--Hb_004218_080 Hb_002030_100 Hb_002030_100 Hb_012814_030--Hb_002030_100 Hb_073171_050 Hb_073171_050 Hb_012814_030--Hb_073171_050 Hb_007193_030 Hb_007193_030 Hb_012814_030--Hb_007193_030 Hb_004109_150 Hb_004109_150 Hb_012814_030--Hb_004109_150 Hb_002999_130 Hb_002999_130 Hb_012814_030--Hb_002999_130 Hb_004218_080--Hb_007193_030 Hb_005725_280 Hb_005725_280 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_003106_240 Hb_003106_240 Hb_004218_080--Hb_003106_240 Hb_006358_030 Hb_006358_030 Hb_002030_100--Hb_006358_030 Hb_002030_100--Hb_004109_150 Hb_036492_020 Hb_036492_020 Hb_002030_100--Hb_036492_020 Hb_000032_590 Hb_000032_590 Hb_002030_100--Hb_000032_590 Hb_000656_260 Hb_000656_260 Hb_002030_100--Hb_000656_260 Hb_003073_040 Hb_003073_040 Hb_002030_100--Hb_003073_040 Hb_001369_020 Hb_001369_020 Hb_073171_050--Hb_001369_020 Hb_073171_050--Hb_002999_130 Hb_073171_050--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_073171_050--Hb_028285_020 Hb_001623_410 Hb_001623_410 Hb_073171_050--Hb_001623_410 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040 Hb_007193_030--Hb_001369_020 Hb_007193_030--Hb_001623_410 Hb_007193_030--Hb_005725_280 Hb_003905_040 Hb_003905_040 Hb_007193_030--Hb_003905_040 Hb_004109_150--Hb_000156_080 Hb_002783_130 Hb_002783_130 Hb_004109_150--Hb_002783_130 Hb_004109_150--Hb_006358_030 Hb_004109_150--Hb_000656_260 Hb_004109_150--Hb_036492_020 Hb_000594_150 Hb_000594_150 Hb_002999_130--Hb_000594_150 Hb_002999_130--Hb_000656_260 Hb_010180_050 Hb_010180_050 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_002999_130--Hb_001369_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168947 12.8007 9.0619 4.63117 0.0549341 1.21297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202124 0.582742 0 0.536049 7.445

CAGE analysis