Hb_004970_180

Information

Type -
Description -
Location Contig4970: 140725-141102
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45563: 140639-140965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_180 0.0 - - -
2 Hb_003018_040 0.1382514353 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
3 Hb_000853_220 0.1389791685 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
4 Hb_001437_010 0.1427708525 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
5 Hb_000358_200 0.1516723275 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
6 Hb_000258_370 0.1577331224 - - hypothetical protein [Ricinus communis]
7 Hb_048755_020 0.1622182881 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
8 Hb_007313_070 0.1647725978 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
9 Hb_003001_040 0.1675725995 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
10 Hb_001369_780 0.1713866112 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002774_150 0.1725162872 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
12 Hb_000122_220 0.1737208629 - - Prenylated Rab acceptor protein, putative [Ricinus communis]
13 Hb_000117_060 0.1740153828 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
14 Hb_001856_220 0.1742016982 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001396_070 0.1760922505 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011930_100 0.1762796364 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
17 Hb_005568_130 0.1765814601 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
18 Hb_000139_180 0.1766448074 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
19 Hb_006615_030 0.1771512148 - - prolyl oligopeptidase family protein [Populus trichocarpa]
20 Hb_006054_030 0.1774071364 - - PREDICTED: protein GPR107-like [Jatropha curcas]

Gene co-expression network

sample Hb_004970_180 Hb_004970_180 Hb_003018_040 Hb_003018_040 Hb_004970_180--Hb_003018_040 Hb_000853_220 Hb_000853_220 Hb_004970_180--Hb_000853_220 Hb_001437_010 Hb_001437_010 Hb_004970_180--Hb_001437_010 Hb_000358_200 Hb_000358_200 Hb_004970_180--Hb_000358_200 Hb_000258_370 Hb_000258_370 Hb_004970_180--Hb_000258_370 Hb_048755_020 Hb_048755_020 Hb_004970_180--Hb_048755_020 Hb_012082_010 Hb_012082_010 Hb_003018_040--Hb_012082_010 Hb_000218_020 Hb_000218_020 Hb_003018_040--Hb_000218_020 Hb_044653_020 Hb_044653_020 Hb_003018_040--Hb_044653_020 Hb_001454_220 Hb_001454_220 Hb_003018_040--Hb_001454_220 Hb_012038_010 Hb_012038_010 Hb_003018_040--Hb_012038_010 Hb_007017_070 Hb_007017_070 Hb_003018_040--Hb_007017_070 Hb_013405_180 Hb_013405_180 Hb_000853_220--Hb_013405_180 Hb_001396_070 Hb_001396_070 Hb_000853_220--Hb_001396_070 Hb_002248_130 Hb_002248_130 Hb_000853_220--Hb_002248_130 Hb_006615_030 Hb_006615_030 Hb_000853_220--Hb_006615_030 Hb_011930_100 Hb_011930_100 Hb_000853_220--Hb_011930_100 Hb_002248_120 Hb_002248_120 Hb_000853_220--Hb_002248_120 Hb_001437_010--Hb_048755_020 Hb_007313_070 Hb_007313_070 Hb_001437_010--Hb_007313_070 Hb_000186_200 Hb_000186_200 Hb_001437_010--Hb_000186_200 Hb_002701_210 Hb_002701_210 Hb_001437_010--Hb_002701_210 Hb_000071_140 Hb_000071_140 Hb_001437_010--Hb_000071_140 Hb_004108_240 Hb_004108_240 Hb_001437_010--Hb_004108_240 Hb_000122_220 Hb_000122_220 Hb_000358_200--Hb_000122_220 Hb_001488_270 Hb_001488_270 Hb_000358_200--Hb_001488_270 Hb_003895_020 Hb_003895_020 Hb_000358_200--Hb_003895_020 Hb_000358_200--Hb_044653_020 Hb_005649_080 Hb_005649_080 Hb_000358_200--Hb_005649_080 Hb_004659_090 Hb_004659_090 Hb_000358_200--Hb_004659_090 Hb_138585_100 Hb_138585_100 Hb_000258_370--Hb_138585_100 Hb_002071_050 Hb_002071_050 Hb_000258_370--Hb_002071_050 Hb_006711_070 Hb_006711_070 Hb_000258_370--Hb_006711_070 Hb_000252_210 Hb_000252_210 Hb_000258_370--Hb_000252_210 Hb_003125_030 Hb_003125_030 Hb_000258_370--Hb_003125_030 Hb_006054_030 Hb_006054_030 Hb_000258_370--Hb_006054_030 Hb_048755_020--Hb_007313_070 Hb_048755_020--Hb_000071_140 Hb_000045_260 Hb_000045_260 Hb_048755_020--Hb_000045_260 Hb_004994_300 Hb_004994_300 Hb_048755_020--Hb_004994_300 Hb_048755_020--Hb_000186_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27107 4.58727 1.54335 2.24549 1.37256 1.17306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222712 0.69983 0.549709 0.151788 1.80804

CAGE analysis