Hb_004109_070

Information

Type -
Description -
Location Contig4109: 62734-64399
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010934mg
description hypothetical protein
nr
ID XP_007211984.1
description hypothetical protein PRUPE_ppa010934mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WV08
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010934mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40627: 64027-64144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_070 0.0 - - hypothetical protein PRUPE_ppa010934mg [Prunus persica]
2 Hb_025214_090 0.2979452535 - - clathrin assembly protein, putative [Ricinus communis]
3 Hb_010119_020 0.3208248232 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_004965_050 0.3250980961 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
5 Hb_004712_170 0.3259216758 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
6 Hb_000665_020 0.3324821302 - - -
7 Hb_000179_240 0.3398862583 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
8 Hb_003327_040 0.344656676 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
9 Hb_000809_090 0.347823358 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
10 Hb_078806_010 0.3478967578 - - hypothetical protein CISIN_1g031839mg [Citrus sinensis]
11 Hb_033363_060 0.3569721515 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
12 Hb_007403_080 0.3577978367 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001811_130 0.3588845517 - - -
14 Hb_000069_230 0.3614450282 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
15 Hb_001059_080 0.3623228851 - - PREDICTED: F-box protein At1g61340-like [Musa acuminata subsp. malaccensis]
16 Hb_000483_040 0.3625099503 - - Cell division protein ftsH, putative [Ricinus communis]
17 Hb_122408_010 0.365436929 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_024404_030 0.3656453832 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial-like [Jatropha curcas]
19 Hb_012753_220 0.3670586499 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
20 Hb_159921_010 0.3673012121 - - -

Gene co-expression network

sample Hb_004109_070 Hb_004109_070 Hb_025214_090 Hb_025214_090 Hb_004109_070--Hb_025214_090 Hb_010119_020 Hb_010119_020 Hb_004109_070--Hb_010119_020 Hb_004965_050 Hb_004965_050 Hb_004109_070--Hb_004965_050 Hb_004712_170 Hb_004712_170 Hb_004109_070--Hb_004712_170 Hb_000665_020 Hb_000665_020 Hb_004109_070--Hb_000665_020 Hb_000179_240 Hb_000179_240 Hb_004109_070--Hb_000179_240 Hb_025214_090--Hb_004712_170 Hb_004204_050 Hb_004204_050 Hb_025214_090--Hb_004204_050 Hb_000152_510 Hb_000152_510 Hb_025214_090--Hb_000152_510 Hb_002631_320 Hb_002631_320 Hb_025214_090--Hb_002631_320 Hb_007592_020 Hb_007592_020 Hb_025214_090--Hb_007592_020 Hb_007441_110 Hb_007441_110 Hb_025214_090--Hb_007441_110 Hb_003517_060 Hb_003517_060 Hb_010119_020--Hb_003517_060 Hb_000976_380 Hb_000976_380 Hb_010119_020--Hb_000976_380 Hb_004449_050 Hb_004449_050 Hb_010119_020--Hb_004449_050 Hb_001059_080 Hb_001059_080 Hb_010119_020--Hb_001059_080 Hb_000009_580 Hb_000009_580 Hb_010119_020--Hb_000009_580 Hb_012760_010 Hb_012760_010 Hb_010119_020--Hb_012760_010 Hb_002685_200 Hb_002685_200 Hb_004965_050--Hb_002685_200 Hb_004965_050--Hb_000179_240 Hb_003077_050 Hb_003077_050 Hb_004965_050--Hb_003077_050 Hb_000072_190 Hb_000072_190 Hb_004965_050--Hb_000072_190 Hb_004117_170 Hb_004117_170 Hb_004965_050--Hb_004117_170 Hb_171900_020 Hb_171900_020 Hb_004965_050--Hb_171900_020 Hb_007403_110 Hb_007403_110 Hb_004712_170--Hb_007403_110 Hb_004712_170--Hb_004204_050 Hb_001377_360 Hb_001377_360 Hb_004712_170--Hb_001377_360 Hb_004712_170--Hb_002631_320 Hb_004712_170--Hb_000179_240 Hb_002876_160 Hb_002876_160 Hb_000665_020--Hb_002876_160 Hb_000007_180 Hb_000007_180 Hb_000665_020--Hb_000007_180 Hb_122408_010 Hb_122408_010 Hb_000665_020--Hb_122408_010 Hb_092408_010 Hb_092408_010 Hb_000665_020--Hb_092408_010 Hb_000384_110 Hb_000384_110 Hb_000665_020--Hb_000384_110 Hb_002774_140 Hb_002774_140 Hb_000665_020--Hb_002774_140 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.356846 0.186706 0.0829312 0.0746475 0.212083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.144736 0.255381 0 0

CAGE analysis