Hb_010119_020

Information

Type -
Description -
Location Contig10119: 8195-22384
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010119_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_003517_060 0.2382436061 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
3 Hb_000976_380 0.2602358035 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
4 Hb_004449_050 0.2604745099 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
5 Hb_001059_080 0.2704255949 - - PREDICTED: F-box protein At1g61340-like [Musa acuminata subsp. malaccensis]
6 Hb_000009_580 0.2732120145 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
7 Hb_012760_010 0.2808240628 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
8 Hb_000069_230 0.281002426 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
9 Hb_004316_070 0.2945672427 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
10 Hb_002835_250 0.2962047306 - - octicosapeptide/Phox/Bem1p domain-containing family protein [Populus trichocarpa]
11 Hb_000665_010 0.2971992819 - - hypothetical protein 20 [Hevea brasiliensis]
12 Hb_001950_030 0.2978782432 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
13 Hb_096224_040 0.2985184557 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
14 Hb_000225_050 0.3004946728 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_000483_040 0.3011943594 - - Cell division protein ftsH, putative [Ricinus communis]
16 Hb_089435_010 0.3035410221 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
17 Hb_001277_220 0.3035832898 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
18 Hb_000538_010 0.3057702925 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
19 Hb_012573_080 0.3059722792 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
20 Hb_000465_480 0.3085709771 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_010119_020 Hb_010119_020 Hb_003517_060 Hb_003517_060 Hb_010119_020--Hb_003517_060 Hb_000976_380 Hb_000976_380 Hb_010119_020--Hb_000976_380 Hb_004449_050 Hb_004449_050 Hb_010119_020--Hb_004449_050 Hb_001059_080 Hb_001059_080 Hb_010119_020--Hb_001059_080 Hb_000009_580 Hb_000009_580 Hb_010119_020--Hb_000009_580 Hb_012760_010 Hb_012760_010 Hb_010119_020--Hb_012760_010 Hb_003517_060--Hb_004449_050 Hb_000465_480 Hb_000465_480 Hb_003517_060--Hb_000465_480 Hb_000336_140 Hb_000336_140 Hb_003517_060--Hb_000336_140 Hb_018133_030 Hb_018133_030 Hb_003517_060--Hb_018133_030 Hb_001053_030 Hb_001053_030 Hb_003517_060--Hb_001053_030 Hb_000140_070 Hb_000140_070 Hb_003517_060--Hb_000140_070 Hb_012573_080 Hb_012573_080 Hb_000976_380--Hb_012573_080 Hb_000665_010 Hb_000665_010 Hb_000976_380--Hb_000665_010 Hb_010831_020 Hb_010831_020 Hb_000976_380--Hb_010831_020 Hb_007257_050 Hb_007257_050 Hb_000976_380--Hb_007257_050 Hb_001638_040 Hb_001638_040 Hb_000976_380--Hb_001638_040 Hb_002849_080 Hb_002849_080 Hb_000976_380--Hb_002849_080 Hb_004449_050--Hb_018133_030 Hb_030827_060 Hb_030827_060 Hb_004449_050--Hb_030827_060 Hb_003349_010 Hb_003349_010 Hb_004449_050--Hb_003349_010 Hb_000340_110 Hb_000340_110 Hb_004449_050--Hb_000340_110 Hb_026198_040 Hb_026198_040 Hb_004449_050--Hb_026198_040 Hb_000538_010 Hb_000538_010 Hb_001059_080--Hb_000538_010 Hb_000152_510 Hb_000152_510 Hb_001059_080--Hb_000152_510 Hb_001307_010 Hb_001307_010 Hb_001059_080--Hb_001307_010 Hb_000390_220 Hb_000390_220 Hb_001059_080--Hb_000390_220 Hb_013394_060 Hb_013394_060 Hb_001059_080--Hb_013394_060 Hb_000122_250 Hb_000122_250 Hb_001059_080--Hb_000122_250 Hb_003106_040 Hb_003106_040 Hb_000009_580--Hb_003106_040 Hb_000009_580--Hb_000665_010 Hb_000009_580--Hb_003517_060 Hb_096224_040 Hb_096224_040 Hb_000009_580--Hb_096224_040 Hb_000009_580--Hb_001053_030 Hb_000009_580--Hb_000336_140 Hb_000483_040 Hb_000483_040 Hb_012760_010--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_012760_010--Hb_009838_060 Hb_001546_110 Hb_001546_110 Hb_012760_010--Hb_001546_110 Hb_003078_050 Hb_003078_050 Hb_012760_010--Hb_003078_050 Hb_000069_230 Hb_000069_230 Hb_012760_010--Hb_000069_230 Hb_003494_060 Hb_003494_060 Hb_012760_010--Hb_003494_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00886991 0.0415554 0.00344916 0.00302646 0.0174624 0.0156399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00790469 0.0151947 0 0

CAGE analysis