Hb_004055_110

Information

Type -
Description -
Location Contig4055: 79349-80958
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012999mg
description hypothetical protein
nr
ID XP_012068954.1
description PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0M9
description Ribosomal protein L34 OS=Jatropha curcas GN=JCGZ_24752 PE=3 SV=1
Gene Ontology
ID GO:0030529
description 50s ribosomal protein l34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40217: 78483-80821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_110 0.0 - - PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
2 Hb_007603_020 0.2399530601 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
3 Hb_019592_010 0.24670985 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
4 Hb_050686_010 0.2658208594 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001097_060 0.2745546171 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
6 Hb_000684_130 0.2822324399 - - -
7 Hb_188411_010 0.2847774246 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
8 Hb_002232_300 0.2914905304 - - Squalene monooxygenase, putative [Ricinus communis]
9 Hb_054436_010 0.29668446 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
10 Hb_002570_010 0.2990487058 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
11 Hb_100964_010 0.3010685244 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_105427_010 0.3039966509 - - -
13 Hb_007547_040 0.3075749769 - - Auxin response factor 9 [Aegilops tauschii]
14 Hb_091761_010 0.3078223665 - - Rhomboid protein, putative [Ricinus communis]
15 Hb_161023_010 0.3086014671 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
16 Hb_001767_040 0.3096498122 - - dehydroascorbate reductase, putative [Ricinus communis]
17 Hb_007926_010 0.3113252594 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
18 Hb_005843_160 0.3138955402 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
19 Hb_114638_010 0.3158570456 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
20 Hb_000816_010 0.3169368108 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004055_110 Hb_004055_110 Hb_007603_020 Hb_007603_020 Hb_004055_110--Hb_007603_020 Hb_019592_010 Hb_019592_010 Hb_004055_110--Hb_019592_010 Hb_050686_010 Hb_050686_010 Hb_004055_110--Hb_050686_010 Hb_001097_060 Hb_001097_060 Hb_004055_110--Hb_001097_060 Hb_000684_130 Hb_000684_130 Hb_004055_110--Hb_000684_130 Hb_188411_010 Hb_188411_010 Hb_004055_110--Hb_188411_010 Hb_002035_090 Hb_002035_090 Hb_007603_020--Hb_002035_090 Hb_001767_040 Hb_001767_040 Hb_007603_020--Hb_001767_040 Hb_000181_410 Hb_000181_410 Hb_007603_020--Hb_000181_410 Hb_100964_010 Hb_100964_010 Hb_007603_020--Hb_100964_010 Hb_001622_010 Hb_001622_010 Hb_007603_020--Hb_001622_010 Hb_000165_140 Hb_000165_140 Hb_007603_020--Hb_000165_140 Hb_007749_010 Hb_007749_010 Hb_019592_010--Hb_007749_010 Hb_019592_010--Hb_000684_130 Hb_000424_080 Hb_000424_080 Hb_019592_010--Hb_000424_080 Hb_000098_020 Hb_000098_020 Hb_019592_010--Hb_000098_020 Hb_000155_060 Hb_000155_060 Hb_019592_010--Hb_000155_060 Hb_114984_010 Hb_114984_010 Hb_050686_010--Hb_114984_010 Hb_006483_010 Hb_006483_010 Hb_050686_010--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_050686_010--Hb_000366_190 Hb_000040_050 Hb_000040_050 Hb_050686_010--Hb_000040_050 Hb_120662_010 Hb_120662_010 Hb_050686_010--Hb_120662_010 Hb_000329_420 Hb_000329_420 Hb_050686_010--Hb_000329_420 Hb_162378_010 Hb_162378_010 Hb_001097_060--Hb_162378_010 Hb_000556_150 Hb_000556_150 Hb_001097_060--Hb_000556_150 Hb_105427_010 Hb_105427_010 Hb_001097_060--Hb_105427_010 Hb_114638_010 Hb_114638_010 Hb_001097_060--Hb_114638_010 Hb_007919_080 Hb_007919_080 Hb_001097_060--Hb_007919_080 Hb_003371_060 Hb_003371_060 Hb_001097_060--Hb_003371_060 Hb_013399_080 Hb_013399_080 Hb_000684_130--Hb_013399_080 Hb_005843_160 Hb_005843_160 Hb_000684_130--Hb_005843_160 Hb_002863_090 Hb_002863_090 Hb_000684_130--Hb_002863_090 Hb_003872_010 Hb_003872_010 Hb_000684_130--Hb_003872_010 Hb_097646_010 Hb_097646_010 Hb_000684_130--Hb_097646_010 Hb_161023_010 Hb_161023_010 Hb_188411_010--Hb_161023_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_160233_020 Hb_160233_020 Hb_188411_010--Hb_160233_020 Hb_133605_010 Hb_133605_010 Hb_188411_010--Hb_133605_010 Hb_014919_020 Hb_014919_020 Hb_188411_010--Hb_014919_020 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76721 0.564526 0.743185 1.54793 1.93565 0.320531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.653611 0 0

CAGE analysis