Hb_003216_130

Information

Type -
Description -
Location Contig3216: 137722-139830
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16350g
description POPTRDRAFT_664876; hypothetical protein
nr
ID XP_012081454.1
description PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
swissprot
ID Q2YT48
description Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1
trembl
ID A0A067K1A8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18486 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34026: 137308-140800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_130 0.0 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
2 Hb_000664_090 0.0964605144 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
3 Hb_001998_210 0.0970676506 - - unnamed protein product [Coffea canephora]
4 Hb_000376_210 0.099983065 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
5 Hb_001865_100 0.1008297503 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
6 Hb_003687_130 0.1029861975 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
7 Hb_000665_200 0.1079132463 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_116349_120 0.1093398583 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_004052_110 0.11194517 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
10 Hb_000015_090 0.1121790236 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
11 Hb_000510_190 0.1138152212 - - glutathione reductase [Hevea brasiliensis]
12 Hb_001117_110 0.1141210266 - - PREDICTED: dynamin-2A [Jatropha curcas]
13 Hb_001998_150 0.1167100772 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
14 Hb_006916_050 0.1174819727 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_001439_070 0.1194041982 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_000844_050 0.1200952263 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
17 Hb_007313_040 0.1208696207 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
18 Hb_003661_010 0.1216992453 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
19 Hb_004943_040 0.1221311068 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
20 Hb_000570_020 0.1223712072 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003216_130 Hb_003216_130 Hb_000664_090 Hb_000664_090 Hb_003216_130--Hb_000664_090 Hb_001998_210 Hb_001998_210 Hb_003216_130--Hb_001998_210 Hb_000376_210 Hb_000376_210 Hb_003216_130--Hb_000376_210 Hb_001865_100 Hb_001865_100 Hb_003216_130--Hb_001865_100 Hb_003687_130 Hb_003687_130 Hb_003216_130--Hb_003687_130 Hb_000665_200 Hb_000665_200 Hb_003216_130--Hb_000665_200 Hb_004375_110 Hb_004375_110 Hb_000664_090--Hb_004375_110 Hb_048476_080 Hb_048476_080 Hb_000664_090--Hb_048476_080 Hb_008165_020 Hb_008165_020 Hb_000664_090--Hb_008165_020 Hb_000015_090 Hb_000015_090 Hb_000664_090--Hb_000015_090 Hb_001507_050 Hb_001507_050 Hb_000664_090--Hb_001507_050 Hb_000844_050 Hb_000844_050 Hb_000664_090--Hb_000844_050 Hb_001414_010 Hb_001414_010 Hb_001998_210--Hb_001414_010 Hb_001439_070 Hb_001439_070 Hb_001998_210--Hb_001439_070 Hb_001059_060 Hb_001059_060 Hb_001998_210--Hb_001059_060 Hb_004052_110 Hb_004052_110 Hb_001998_210--Hb_004052_110 Hb_009078_020 Hb_009078_020 Hb_001998_210--Hb_009078_020 Hb_000300_030 Hb_000300_030 Hb_001998_210--Hb_000300_030 Hb_006916_050 Hb_006916_050 Hb_000376_210--Hb_006916_050 Hb_000617_250 Hb_000617_250 Hb_000376_210--Hb_000617_250 Hb_021079_020 Hb_021079_020 Hb_000376_210--Hb_021079_020 Hb_004629_030 Hb_004629_030 Hb_000376_210--Hb_004629_030 Hb_000762_110 Hb_000762_110 Hb_000376_210--Hb_000762_110 Hb_068804_090 Hb_068804_090 Hb_000376_210--Hb_068804_090 Hb_004943_040 Hb_004943_040 Hb_001865_100--Hb_004943_040 Hb_001865_100--Hb_004052_110 Hb_001865_100--Hb_003687_130 Hb_001865_100--Hb_000665_200 Hb_000510_190 Hb_000510_190 Hb_001865_100--Hb_000510_190 Hb_002259_220 Hb_002259_220 Hb_001865_100--Hb_002259_220 Hb_000452_030 Hb_000452_030 Hb_003687_130--Hb_000452_030 Hb_000015_200 Hb_000015_200 Hb_003687_130--Hb_000015_200 Hb_001766_070 Hb_001766_070 Hb_003687_130--Hb_001766_070 Hb_003687_130--Hb_000015_090 Hb_003581_130 Hb_003581_130 Hb_003687_130--Hb_003581_130 Hb_002026_030 Hb_002026_030 Hb_000665_200--Hb_002026_030 Hb_001969_130 Hb_001969_130 Hb_000665_200--Hb_001969_130 Hb_000665_200--Hb_004052_110 Hb_001221_300 Hb_001221_300 Hb_000665_200--Hb_001221_300 Hb_000066_040 Hb_000066_040 Hb_000665_200--Hb_000066_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61095 6.70814 6.13136 8.08418 2.0492 0.744009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06433 2.39459 1.71712 3.79551 10.0303

CAGE analysis