Hb_002759_040

Information

Type -
Description -
Location Contig2759: 19352-21114
Sequence    

Annotation

kegg
ID brp:103840717
description uncharacterized LOC103840717
nr
ID CDY16249.1
description BnaA09g29830D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078FTJ1
description BnaA09g29830D protein OS=Brassica napus GN=BnaA09g29830D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28852: 20668-20829 , PASA_asmbl_28853: 21025-21379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_040 0.0 - - BnaA09g29830D [Brassica napus]
2 Hb_007594_110 0.1374830837 - - fructokinase [Manihot esculenta]
3 Hb_000329_080 0.1675493684 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
4 Hb_000163_110 0.1699404773 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
5 Hb_004724_260 0.1757495947 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
6 Hb_006370_050 0.1765817158 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_062013_010 0.1781386419 - - phosphoprotein phosphatase, putative [Ricinus communis]
8 Hb_000914_190 0.1837664757 - - xanthine dehydrogenase, putative [Ricinus communis]
9 Hb_182651_020 0.1853426216 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_000414_180 0.1853985219 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
11 Hb_004712_200 0.1870867152 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
12 Hb_006483_120 0.1909227375 - - DNA binding protein, putative [Ricinus communis]
13 Hb_005288_060 0.1944635761 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
14 Hb_000300_680 0.1985278181 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
15 Hb_001811_080 0.2016843214 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
16 Hb_031330_020 0.2016957597 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
17 Hb_005977_060 0.2017136474 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010632_010 0.2025763337 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
19 Hb_124579_020 0.2028062536 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
20 Hb_000313_230 0.2035149149 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]

Gene co-expression network

sample Hb_002759_040 Hb_002759_040 Hb_007594_110 Hb_007594_110 Hb_002759_040--Hb_007594_110 Hb_000329_080 Hb_000329_080 Hb_002759_040--Hb_000329_080 Hb_000163_110 Hb_000163_110 Hb_002759_040--Hb_000163_110 Hb_004724_260 Hb_004724_260 Hb_002759_040--Hb_004724_260 Hb_006370_050 Hb_006370_050 Hb_002759_040--Hb_006370_050 Hb_062013_010 Hb_062013_010 Hb_002759_040--Hb_062013_010 Hb_007594_110--Hb_000163_110 Hb_000963_090 Hb_000963_090 Hb_007594_110--Hb_000963_090 Hb_007594_110--Hb_000329_080 Hb_009620_060 Hb_009620_060 Hb_007594_110--Hb_009620_060 Hb_000108_250 Hb_000108_250 Hb_007594_110--Hb_000108_250 Hb_001365_010 Hb_001365_010 Hb_000329_080--Hb_001365_010 Hb_000329_080--Hb_000163_110 Hb_001195_370 Hb_001195_370 Hb_000329_080--Hb_001195_370 Hb_000300_680 Hb_000300_680 Hb_000329_080--Hb_000300_680 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_001365_020 Hb_001365_020 Hb_000163_110--Hb_001365_020 Hb_000163_110--Hb_001365_010 Hb_000441_050 Hb_000441_050 Hb_000163_110--Hb_000441_050 Hb_005977_060 Hb_005977_060 Hb_000163_110--Hb_005977_060 Hb_000163_110--Hb_000300_680 Hb_000638_100 Hb_000638_100 Hb_004724_260--Hb_000638_100 Hb_000033_010 Hb_000033_010 Hb_004724_260--Hb_000033_010 Hb_006915_010 Hb_006915_010 Hb_004724_260--Hb_006915_010 Hb_006198_040 Hb_006198_040 Hb_004724_260--Hb_006198_040 Hb_002122_070 Hb_002122_070 Hb_004724_260--Hb_002122_070 Hb_001652_130 Hb_001652_130 Hb_004724_260--Hb_001652_130 Hb_002949_020 Hb_002949_020 Hb_006370_050--Hb_002949_020 Hb_002235_110 Hb_002235_110 Hb_006370_050--Hb_002235_110 Hb_001278_090 Hb_001278_090 Hb_006370_050--Hb_001278_090 Hb_074197_030 Hb_074197_030 Hb_006370_050--Hb_074197_030 Hb_005276_070 Hb_005276_070 Hb_006370_050--Hb_005276_070 Hb_000621_030 Hb_000621_030 Hb_006370_050--Hb_000621_030 Hb_062013_010--Hb_000329_080 Hb_001080_150 Hb_001080_150 Hb_062013_010--Hb_001080_150 Hb_000414_180 Hb_000414_180 Hb_062013_010--Hb_000414_180 Hb_062013_010--Hb_000963_090 Hb_062013_010--Hb_001365_010 Hb_182651_020 Hb_182651_020 Hb_062013_010--Hb_182651_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.446303 0.314312 1.3194 1.50345 0 0.126903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146731 0 0.193028 1.83068 5.32003

CAGE analysis