Hb_002150_070

Information

Type transcription factor
Description TF Family: ERF
Location Contig2150: 67259-68263
Sequence    

Annotation

kegg
ID pmum:103337685
description ethylene-responsive transcription factor CRF2-like
nr
ID XP_012086774.1
description PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
swissprot
ID Q9SUQ2
description Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1
trembl
ID A0A067JN86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20493 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor crf2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_070 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
2 Hb_183963_010 0.2169896557 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
3 Hb_003197_010 0.2187511696 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000389_050 0.227230694 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
5 Hb_001229_020 0.2313273064 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
6 Hb_063866_010 0.235748323 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
7 Hb_000078_080 0.2450193481 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_17040 [Jatropha curcas]
8 Hb_000700_080 0.2491062164 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003494_130 0.2570859249 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
10 Hb_001863_020 0.2592388905 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
11 Hb_004102_010 0.2607387351 - - F-box family protein [Theobroma cacao]
12 Hb_011053_020 0.2608029822 - - lipoic acid synthetase, putative [Ricinus communis]
13 Hb_000016_200 0.2629713532 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003941_030 0.2630812559 - - Protease ecfE, putative [Ricinus communis]
15 Hb_000849_120 0.2643100028 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
16 Hb_042202_060 0.2649608335 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
17 Hb_008803_040 0.2664699155 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
18 Hb_003728_090 0.2678013677 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
19 Hb_000465_320 0.2724747901 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
20 Hb_000365_370 0.2733347139 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002150_070 Hb_002150_070 Hb_183963_010 Hb_183963_010 Hb_002150_070--Hb_183963_010 Hb_003197_010 Hb_003197_010 Hb_002150_070--Hb_003197_010 Hb_000389_050 Hb_000389_050 Hb_002150_070--Hb_000389_050 Hb_001229_020 Hb_001229_020 Hb_002150_070--Hb_001229_020 Hb_063866_010 Hb_063866_010 Hb_002150_070--Hb_063866_010 Hb_000078_080 Hb_000078_080 Hb_002150_070--Hb_000078_080 Hb_011053_020 Hb_011053_020 Hb_183963_010--Hb_011053_020 Hb_005228_040 Hb_005228_040 Hb_183963_010--Hb_005228_040 Hb_000866_050 Hb_000866_050 Hb_183963_010--Hb_000866_050 Hb_026314_030 Hb_026314_030 Hb_183963_010--Hb_026314_030 Hb_011053_030 Hb_011053_030 Hb_183963_010--Hb_011053_030 Hb_000023_210 Hb_000023_210 Hb_183963_010--Hb_000023_210 Hb_000077_360 Hb_000077_360 Hb_003197_010--Hb_000077_360 Hb_004102_010 Hb_004102_010 Hb_003197_010--Hb_004102_010 Hb_001488_190 Hb_001488_190 Hb_003197_010--Hb_001488_190 Hb_017358_070 Hb_017358_070 Hb_003197_010--Hb_017358_070 Hb_000477_040 Hb_000477_040 Hb_003197_010--Hb_000477_040 Hb_000445_120 Hb_000445_120 Hb_003197_010--Hb_000445_120 Hb_016564_010 Hb_016564_010 Hb_000389_050--Hb_016564_010 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_020301_030 Hb_020301_030 Hb_000389_050--Hb_020301_030 Hb_000365_370 Hb_000365_370 Hb_000389_050--Hb_000365_370 Hb_000679_220 Hb_000679_220 Hb_000389_050--Hb_000679_220 Hb_000460_070 Hb_000460_070 Hb_001229_020--Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_001229_020--Hb_008698_010 Hb_003124_110 Hb_003124_110 Hb_001229_020--Hb_003124_110 Hb_001621_060 Hb_001621_060 Hb_001229_020--Hb_001621_060 Hb_002078_300 Hb_002078_300 Hb_001229_020--Hb_002078_300 Hb_002534_030 Hb_002534_030 Hb_001229_020--Hb_002534_030 Hb_031330_020 Hb_031330_020 Hb_063866_010--Hb_031330_020 Hb_063866_010--Hb_011053_020 Hb_063866_010--Hb_183963_010 Hb_002527_040 Hb_002527_040 Hb_063866_010--Hb_002527_040 Hb_002894_090 Hb_002894_090 Hb_063866_010--Hb_002894_090 Hb_007933_030 Hb_007933_030 Hb_063866_010--Hb_007933_030 Hb_009486_040 Hb_009486_040 Hb_000078_080--Hb_009486_040 Hb_000230_290 Hb_000230_290 Hb_000078_080--Hb_000230_290 Hb_000705_250 Hb_000705_250 Hb_000078_080--Hb_000705_250 Hb_003025_140 Hb_003025_140 Hb_000078_080--Hb_003025_140 Hb_001393_010 Hb_001393_010 Hb_000078_080--Hb_001393_010 Hb_011224_100 Hb_011224_100 Hb_000078_080--Hb_011224_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.247405 0.422484 0.337866 1.18412 0 0.0242563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20145 0.316881 1.67743 0.0955628 2.59397

CAGE analysis