Hb_001723_120

Information

Type -
Description -
Location Contig1723: 122481-123756
Sequence    

Annotation

kegg
ID rcu:RCOM_1002880
description hypothetical protein
nr
ID XP_002519298.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZX9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1002880 PE=4 SV=1
Gene Ontology
ID GO:0030247
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16274: 122687-123376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003910_010 0.2522880138 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
3 Hb_000331_120 0.252723968 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000863_030 0.2568699443 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
5 Hb_003893_140 0.2710984133 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
6 Hb_001476_060 0.2743670032 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
7 Hb_002301_360 0.2811005598 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
8 Hb_007919_020 0.2837893257 - - electron transporter, putative [Ricinus communis]
9 Hb_024879_010 0.2877452846 - - unknown [Glycine max]
10 Hb_004899_310 0.2909750018 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001898_150 0.2924008719 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
12 Hb_001481_160 0.2926398437 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
13 Hb_000038_120 0.2982148982 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
14 Hb_080128_020 0.2987284677 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011457_130 0.2997268023 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
16 Hb_001825_040 0.3023038328 - - myosin XI, putative [Ricinus communis]
17 Hb_028001_020 0.3024724282 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
18 Hb_003673_050 0.302794322 - - hypothetical protein POPTR_0001s40990g [Populus trichocarpa]
19 Hb_002148_020 0.3059628597 - - aldo-keto reductase, putative [Ricinus communis]
20 Hb_000975_350 0.3079088972 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_001723_120 Hb_001723_120 Hb_003910_010 Hb_003910_010 Hb_001723_120--Hb_003910_010 Hb_000331_120 Hb_000331_120 Hb_001723_120--Hb_000331_120 Hb_000863_030 Hb_000863_030 Hb_001723_120--Hb_000863_030 Hb_003893_140 Hb_003893_140 Hb_001723_120--Hb_003893_140 Hb_001476_060 Hb_001476_060 Hb_001723_120--Hb_001476_060 Hb_002301_360 Hb_002301_360 Hb_001723_120--Hb_002301_360 Hb_029695_050 Hb_029695_050 Hb_003910_010--Hb_029695_050 Hb_131035_010 Hb_131035_010 Hb_003910_010--Hb_131035_010 Hb_135757_010 Hb_135757_010 Hb_003910_010--Hb_135757_010 Hb_011930_150 Hb_011930_150 Hb_003910_010--Hb_011930_150 Hb_000181_290 Hb_000181_290 Hb_003910_010--Hb_000181_290 Hb_024879_010 Hb_024879_010 Hb_003910_010--Hb_024879_010 Hb_080128_020 Hb_080128_020 Hb_000331_120--Hb_080128_020 Hb_009510_020 Hb_009510_020 Hb_000331_120--Hb_009510_020 Hb_000224_100 Hb_000224_100 Hb_000331_120--Hb_000224_100 Hb_000080_220 Hb_000080_220 Hb_000331_120--Hb_000080_220 Hb_007919_020 Hb_007919_020 Hb_000331_120--Hb_007919_020 Hb_005779_030 Hb_005779_030 Hb_000863_030--Hb_005779_030 Hb_028001_020 Hb_028001_020 Hb_000863_030--Hb_028001_020 Hb_039342_010 Hb_039342_010 Hb_000863_030--Hb_039342_010 Hb_001675_010 Hb_001675_010 Hb_000863_030--Hb_001675_010 Hb_010270_010 Hb_010270_010 Hb_000863_030--Hb_010270_010 Hb_002598_010 Hb_002598_010 Hb_000863_030--Hb_002598_010 Hb_032225_030 Hb_032225_030 Hb_003893_140--Hb_032225_030 Hb_007545_140 Hb_007545_140 Hb_003893_140--Hb_007545_140 Hb_000056_220 Hb_000056_220 Hb_003893_140--Hb_000056_220 Hb_000915_070 Hb_000915_070 Hb_003893_140--Hb_000915_070 Hb_025254_020 Hb_025254_020 Hb_003893_140--Hb_025254_020 Hb_001369_140 Hb_001369_140 Hb_003893_140--Hb_001369_140 Hb_004429_090 Hb_004429_090 Hb_001476_060--Hb_004429_090 Hb_002675_140 Hb_002675_140 Hb_001476_060--Hb_002675_140 Hb_001369_250 Hb_001369_250 Hb_001476_060--Hb_001369_250 Hb_001104_230 Hb_001104_230 Hb_001476_060--Hb_001104_230 Hb_000034_070 Hb_000034_070 Hb_001476_060--Hb_000034_070 Hb_001104_100 Hb_001104_100 Hb_001476_060--Hb_001104_100 Hb_000109_240 Hb_000109_240 Hb_002301_360--Hb_000109_240 Hb_001865_080 Hb_001865_080 Hb_002301_360--Hb_001865_080 Hb_004734_040 Hb_004734_040 Hb_002301_360--Hb_004734_040 Hb_000903_060 Hb_000903_060 Hb_002301_360--Hb_000903_060 Hb_000923_090 Hb_000923_090 Hb_002301_360--Hb_000923_090 Hb_002301_360--Hb_001476_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.85062 3.15597 3.42713 13.4115 0.536588 0.490831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.14694 1.10143 1.17739 10.2624 0.344636

CAGE analysis