Hb_080128_020

Information

Type -
Description -
Location Contig80128: 8089-9147
Sequence    

Annotation

kegg
ID rcu:RCOM_0600270
description hypothetical protein
nr
ID XP_002527143.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SII5
description Protein EXORDIUM-like 5 OS=Arabidopsis thaliana GN=EXL5 PE=2 SV=1
trembl
ID B9SMC4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0600270 PE=4 SV=1
Gene Ontology
ID GO:0008168
description protein exordium-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58788: 7790-9176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080128_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000482_020 0.1549241635 - - cell wall invertase [Manihot esculenta]
3 Hb_000976_160 0.1766043053 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
4 Hb_009510_020 0.1767936406 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
5 Hb_001153_150 0.1804084764 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
6 Hb_074783_010 0.180679026 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
7 Hb_001146_010 0.1820106222 - - cystathionine gamma-synthase, putative [Ricinus communis]
8 Hb_004883_030 0.1824516509 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2-like [Jatropha curcas]
9 Hb_003571_030 0.1837358048 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
10 Hb_003647_060 0.1858050892 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
11 Hb_000731_260 0.1889820256 - - hypothetical protein RCOM_0905090 [Ricinus communis]
12 Hb_001314_030 0.1950799688 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
13 Hb_000417_100 0.200977869 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
14 Hb_032969_020 0.2013027041 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000538_230 0.2033067244 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
16 Hb_008643_200 0.2051139263 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
17 Hb_001080_280 0.2059137808 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
18 Hb_009646_040 0.2074746346 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000343_140 0.2085988332 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
20 Hb_010519_050 0.2088586717 - - galactokinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_080128_020 Hb_080128_020 Hb_000482_020 Hb_000482_020 Hb_080128_020--Hb_000482_020 Hb_000976_160 Hb_000976_160 Hb_080128_020--Hb_000976_160 Hb_009510_020 Hb_009510_020 Hb_080128_020--Hb_009510_020 Hb_001153_150 Hb_001153_150 Hb_080128_020--Hb_001153_150 Hb_074783_010 Hb_074783_010 Hb_080128_020--Hb_074783_010 Hb_001146_010 Hb_001146_010 Hb_080128_020--Hb_001146_010 Hb_030827_070 Hb_030827_070 Hb_000482_020--Hb_030827_070 Hb_050454_010 Hb_050454_010 Hb_000482_020--Hb_050454_010 Hb_009646_040 Hb_009646_040 Hb_000482_020--Hb_009646_040 Hb_003571_030 Hb_003571_030 Hb_000482_020--Hb_003571_030 Hb_044736_010 Hb_044736_010 Hb_000482_020--Hb_044736_010 Hb_000483_220 Hb_000483_220 Hb_000482_020--Hb_000483_220 Hb_145314_010 Hb_145314_010 Hb_000976_160--Hb_145314_010 Hb_001102_140 Hb_001102_140 Hb_000976_160--Hb_001102_140 Hb_000000_460 Hb_000000_460 Hb_000976_160--Hb_000000_460 Hb_000307_140 Hb_000307_140 Hb_000976_160--Hb_000307_140 Hb_005725_080 Hb_005725_080 Hb_000976_160--Hb_005725_080 Hb_000413_010 Hb_000413_010 Hb_000976_160--Hb_000413_010 Hb_009510_020--Hb_001153_150 Hb_000258_330 Hb_000258_330 Hb_009510_020--Hb_000258_330 Hb_003582_040 Hb_003582_040 Hb_009510_020--Hb_003582_040 Hb_014497_120 Hb_014497_120 Hb_009510_020--Hb_014497_120 Hb_004883_030 Hb_004883_030 Hb_009510_020--Hb_004883_030 Hb_001247_100 Hb_001247_100 Hb_009510_020--Hb_001247_100 Hb_002732_030 Hb_002732_030 Hb_001153_150--Hb_002732_030 Hb_001153_150--Hb_004883_030 Hb_000362_190 Hb_000362_190 Hb_001153_150--Hb_000362_190 Hb_033594_030 Hb_033594_030 Hb_001153_150--Hb_033594_030 Hb_001153_150--Hb_000307_140 Hb_003647_060 Hb_003647_060 Hb_074783_010--Hb_003647_060 Hb_002577_010 Hb_002577_010 Hb_074783_010--Hb_002577_010 Hb_001021_130 Hb_001021_130 Hb_074783_010--Hb_001021_130 Hb_000592_020 Hb_000592_020 Hb_074783_010--Hb_000592_020 Hb_001053_090 Hb_001053_090 Hb_074783_010--Hb_001053_090 Hb_034688_020 Hb_034688_020 Hb_074783_010--Hb_034688_020 Hb_001146_010--Hb_034688_020 Hb_028487_140 Hb_028487_140 Hb_001146_010--Hb_028487_140 Hb_000061_120 Hb_000061_120 Hb_001146_010--Hb_000061_120 Hb_000152_330 Hb_000152_330 Hb_001146_010--Hb_000152_330 Hb_000538_230 Hb_000538_230 Hb_001146_010--Hb_000538_230 Hb_000749_050 Hb_000749_050 Hb_001146_010--Hb_000749_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6403 25.7634 9.06783 57.0267 7.18085 9.78446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.2757 13.2184 49.5919 25.4844 6.71092

CAGE analysis