Hb_000224_100

Information

Type -
Description -
Location Contig224: 65573-68262
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23292: 67066-67381 , PASA_asmbl_23293: 68117-69442 , PASA_asmbl_23294: 68845-69103
cDNA
(Sanger)
(ID:Location)		 014_G06.ab1: 68156-69442 , 040_O05.ab1: 68118-69353

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_100 0.0 - - -
2 Hb_000331_120 0.2916583154 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006120_110 0.2988348041 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000613_210 0.30327476 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
5 Hb_024682_020 0.3036336456 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
6 Hb_000005_400 0.3057725042 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
7 Hb_004899_310 0.3084054465 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010050_050 0.313397535 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
9 Hb_005306_010 0.3182478437 - - -
10 Hb_019762_040 0.3186125589 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000390_140 0.3212671743 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
12 Hb_007101_010 0.3218416512 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
13 Hb_009510_040 0.3248816762 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
14 Hb_165669_010 0.3255357148 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
15 Hb_002577_010 0.3255558018 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
16 Hb_080128_020 0.3258174664 - - conserved hypothetical protein [Ricinus communis]
17 Hb_162275_020 0.3261517661 - - phosphate transporter [Manihot esculenta]
18 Hb_003442_100 0.3266472092 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
19 Hb_002506_060 0.3273300142 - - PREDICTED: probable transporter mch1 [Populus euphratica]
20 Hb_150930_010 0.3274952084 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000224_100 Hb_000224_100 Hb_000331_120 Hb_000331_120 Hb_000224_100--Hb_000331_120 Hb_006120_110 Hb_006120_110 Hb_000224_100--Hb_006120_110 Hb_000613_210 Hb_000613_210 Hb_000224_100--Hb_000613_210 Hb_024682_020 Hb_024682_020 Hb_000224_100--Hb_024682_020 Hb_000005_400 Hb_000005_400 Hb_000224_100--Hb_000005_400 Hb_004899_310 Hb_004899_310 Hb_000224_100--Hb_004899_310 Hb_001723_120 Hb_001723_120 Hb_000331_120--Hb_001723_120 Hb_080128_020 Hb_080128_020 Hb_000331_120--Hb_080128_020 Hb_009510_020 Hb_009510_020 Hb_000331_120--Hb_009510_020 Hb_000080_220 Hb_000080_220 Hb_000331_120--Hb_000080_220 Hb_007919_020 Hb_007919_020 Hb_000331_120--Hb_007919_020 Hb_007181_040 Hb_007181_040 Hb_006120_110--Hb_007181_040 Hb_073973_140 Hb_073973_140 Hb_006120_110--Hb_073973_140 Hb_001454_240 Hb_001454_240 Hb_006120_110--Hb_001454_240 Hb_006120_110--Hb_024682_020 Hb_002272_010 Hb_002272_010 Hb_006120_110--Hb_002272_010 Hb_000270_440 Hb_000270_440 Hb_006120_110--Hb_000270_440 Hb_000175_540 Hb_000175_540 Hb_000613_210--Hb_000175_540 Hb_001215_040 Hb_001215_040 Hb_000613_210--Hb_001215_040 Hb_000347_440 Hb_000347_440 Hb_000613_210--Hb_000347_440 Hb_006922_050 Hb_006922_050 Hb_000613_210--Hb_006922_050 Hb_000003_720 Hb_000003_720 Hb_000613_210--Hb_000003_720 Hb_000103_270 Hb_000103_270 Hb_000613_210--Hb_000103_270 Hb_034688_020 Hb_034688_020 Hb_024682_020--Hb_034688_020 Hb_005356_040 Hb_005356_040 Hb_024682_020--Hb_005356_040 Hb_000649_240 Hb_000649_240 Hb_024682_020--Hb_000649_240 Hb_001146_010 Hb_001146_010 Hb_024682_020--Hb_001146_010 Hb_002577_010 Hb_002577_010 Hb_024682_020--Hb_002577_010 Hb_010050_050 Hb_010050_050 Hb_024682_020--Hb_010050_050 Hb_007553_010 Hb_007553_010 Hb_000005_400--Hb_007553_010 Hb_000042_360 Hb_000042_360 Hb_000005_400--Hb_000042_360 Hb_162275_020 Hb_162275_020 Hb_000005_400--Hb_162275_020 Hb_000270_740 Hb_000270_740 Hb_000005_400--Hb_000270_740 Hb_158104_020 Hb_158104_020 Hb_000005_400--Hb_158104_020 Hb_003502_100 Hb_003502_100 Hb_000005_400--Hb_003502_100 Hb_003442_100 Hb_003442_100 Hb_004899_310--Hb_003442_100 Hb_005779_030 Hb_005779_030 Hb_004899_310--Hb_005779_030 Hb_000162_220 Hb_000162_220 Hb_004899_310--Hb_000162_220 Hb_111051_010 Hb_111051_010 Hb_004899_310--Hb_111051_010 Hb_000407_070 Hb_000407_070 Hb_004899_310--Hb_000407_070 Hb_004453_070 Hb_004453_070 Hb_004899_310--Hb_004453_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16578 0.450047 0 1.45209 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.71558 1.13853 0.703538 1.07068 0

CAGE analysis