Hb_000613_210

Information

Type -
Description -
Location Contig613: 160512-168661
Sequence    

Annotation

kegg
ID rcu:RCOM_0690870
description Protein ABC1, mitochondrial precursor, putative
nr
ID XP_012081503.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
swissprot
ID P73627
description Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1
trembl
ID A0A067KDL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18518 PE=4 SV=1
Gene Ontology
ID GO:0016301
description uncharacterized aarf domain-containing protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51090: 163093-166372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_210 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
2 Hb_000175_540 0.1394176842 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
3 Hb_001215_040 0.1498002462 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000347_440 0.1513432832 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
5 Hb_006922_050 0.1573300508 - - PREDICTED: dipeptidyl peptidase 8 [Jatropha curcas]
6 Hb_000003_720 0.1589661778 - - hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
7 Hb_000103_270 0.1611188736 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
8 Hb_006698_030 0.162999553 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
9 Hb_181385_010 0.1650150978 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
10 Hb_000116_040 0.1680368874 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
11 Hb_165669_010 0.169219857 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
12 Hb_000329_110 0.1718858616 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
13 Hb_104265_040 0.1726599907 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006913_010 0.1752322233 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
15 Hb_004109_310 0.1753227268 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
16 Hb_002961_060 0.1759842956 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
17 Hb_000312_080 0.1763365741 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
18 Hb_001322_040 0.1774105475 - - -
19 Hb_109484_010 0.1781242339 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_000210_120 0.1786409727 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_210 Hb_000613_210 Hb_000175_540 Hb_000175_540 Hb_000613_210--Hb_000175_540 Hb_001215_040 Hb_001215_040 Hb_000613_210--Hb_001215_040 Hb_000347_440 Hb_000347_440 Hb_000613_210--Hb_000347_440 Hb_006922_050 Hb_006922_050 Hb_000613_210--Hb_006922_050 Hb_000003_720 Hb_000003_720 Hb_000613_210--Hb_000003_720 Hb_000103_270 Hb_000103_270 Hb_000613_210--Hb_000103_270 Hb_000175_540--Hb_001215_040 Hb_000504_070 Hb_000504_070 Hb_000175_540--Hb_000504_070 Hb_004453_050 Hb_004453_050 Hb_000175_540--Hb_004453_050 Hb_028227_070 Hb_028227_070 Hb_000175_540--Hb_028227_070 Hb_109002_020 Hb_109002_020 Hb_000175_540--Hb_109002_020 Hb_000023_280 Hb_000023_280 Hb_000175_540--Hb_000023_280 Hb_000312_080 Hb_000312_080 Hb_001215_040--Hb_000312_080 Hb_001215_040--Hb_000023_280 Hb_011344_120 Hb_011344_120 Hb_001215_040--Hb_011344_120 Hb_001653_020 Hb_001653_020 Hb_001215_040--Hb_001653_020 Hb_005365_030 Hb_005365_030 Hb_001215_040--Hb_005365_030 Hb_006913_010 Hb_006913_010 Hb_000347_440--Hb_006913_010 Hb_000140_480 Hb_000140_480 Hb_000347_440--Hb_000140_480 Hb_004109_310 Hb_004109_310 Hb_000347_440--Hb_004109_310 Hb_000347_440--Hb_000023_280 Hb_000252_200 Hb_000252_200 Hb_000347_440--Hb_000252_200 Hb_000676_190 Hb_000676_190 Hb_000347_440--Hb_000676_190 Hb_003544_030 Hb_003544_030 Hb_006922_050--Hb_003544_030 Hb_017387_010 Hb_017387_010 Hb_006922_050--Hb_017387_010 Hb_003373_030 Hb_003373_030 Hb_006922_050--Hb_003373_030 Hb_003776_060 Hb_003776_060 Hb_006922_050--Hb_003776_060 Hb_010775_040 Hb_010775_040 Hb_006922_050--Hb_010775_040 Hb_023771_010 Hb_023771_010 Hb_006922_050--Hb_023771_010 Hb_020581_010 Hb_020581_010 Hb_000003_720--Hb_020581_010 Hb_101733_030 Hb_101733_030 Hb_000003_720--Hb_101733_030 Hb_006637_070 Hb_006637_070 Hb_000003_720--Hb_006637_070 Hb_014109_040 Hb_014109_040 Hb_000003_720--Hb_014109_040 Hb_038172_010 Hb_038172_010 Hb_000003_720--Hb_038172_010 Hb_005784_040 Hb_005784_040 Hb_000003_720--Hb_005784_040 Hb_000210_120 Hb_000210_120 Hb_000103_270--Hb_000210_120 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000096_160 Hb_000096_160 Hb_000103_270--Hb_000096_160 Hb_005914_170 Hb_005914_170 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_003098_020 Hb_003098_020 Hb_000103_270--Hb_003098_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56819 2.03048 0.410858 3.97136 1.01172 1.54656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82957 5.03883 1.74187 4.26011 0.823969

CAGE analysis