Hb_000080_220

Information

Type -
Description -
Location Contig80: 224223-231978
Sequence    

Annotation

kegg
ID rcu:RCOM_1577280
description ankyrin repeat-containing protein, putative
nr
ID XP_002513462.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9RI93
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1577280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58754: 224406-224593 , PASA_asmbl_58755: 224645-224903 , PASA_asmbl_58757: 230089-230505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_220 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_003333_010 0.1786025138 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
3 Hb_014497_120 0.1931317765 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
4 Hb_002732_030 0.2046931578 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
5 Hb_002471_100 0.2295762378 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
6 Hb_000317_490 0.2328627646 - - Gibberellin receptor GID1, putative [Ricinus communis]
7 Hb_009510_020 0.2345466727 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
8 Hb_010883_100 0.2411968711 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
9 Hb_000421_180 0.2440495416 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001153_150 0.2494893572 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
11 Hb_000202_040 0.2538246442 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
12 Hb_000258_330 0.2563509564 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_000032_440 0.2624420321 - - protein with unknown function [Ricinus communis]
14 Hb_000708_040 0.2653144593 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000170_250 0.2679398754 - - hypothetical protein F775_29828 [Aegilops tauschii]
16 Hb_080128_020 0.2684221382 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000072_070 0.2697876097 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
18 Hb_002615_040 0.2721985186 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
19 Hb_001314_030 0.2747320754 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
20 Hb_011380_020 0.2752707056 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X4 [Populus euphratica]

Gene co-expression network

sample Hb_000080_220 Hb_000080_220 Hb_003333_010 Hb_003333_010 Hb_000080_220--Hb_003333_010 Hb_014497_120 Hb_014497_120 Hb_000080_220--Hb_014497_120 Hb_002732_030 Hb_002732_030 Hb_000080_220--Hb_002732_030 Hb_002471_100 Hb_002471_100 Hb_000080_220--Hb_002471_100 Hb_000317_490 Hb_000317_490 Hb_000080_220--Hb_000317_490 Hb_009510_020 Hb_009510_020 Hb_000080_220--Hb_009510_020 Hb_003333_010--Hb_014497_120 Hb_006154_020 Hb_006154_020 Hb_003333_010--Hb_006154_020 Hb_006775_030 Hb_006775_030 Hb_003333_010--Hb_006775_030 Hb_000708_040 Hb_000708_040 Hb_003333_010--Hb_000708_040 Hb_000331_460 Hb_000331_460 Hb_003333_010--Hb_000331_460 Hb_014497_120--Hb_009510_020 Hb_001153_150 Hb_001153_150 Hb_014497_120--Hb_001153_150 Hb_000914_170 Hb_000914_170 Hb_014497_120--Hb_000914_170 Hb_000032_440 Hb_000032_440 Hb_014497_120--Hb_000032_440 Hb_014497_120--Hb_002732_030 Hb_000258_330 Hb_000258_330 Hb_014497_120--Hb_000258_330 Hb_002732_030--Hb_001153_150 Hb_012940_030 Hb_012940_030 Hb_002732_030--Hb_012940_030 Hb_002732_030--Hb_009510_020 Hb_000362_190 Hb_000362_190 Hb_002732_030--Hb_000362_190 Hb_000362_180 Hb_000362_180 Hb_002732_030--Hb_000362_180 Hb_002301_290 Hb_002301_290 Hb_002471_100--Hb_002301_290 Hb_001373_150 Hb_001373_150 Hb_002471_100--Hb_001373_150 Hb_000072_070 Hb_000072_070 Hb_002471_100--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_002471_100--Hb_035273_030 Hb_011316_100 Hb_011316_100 Hb_002471_100--Hb_011316_100 Hb_005892_060 Hb_005892_060 Hb_002471_100--Hb_005892_060 Hb_000317_490--Hb_000032_440 Hb_002016_170 Hb_002016_170 Hb_000317_490--Hb_002016_170 Hb_002183_070 Hb_002183_070 Hb_000317_490--Hb_002183_070 Hb_000317_490--Hb_011316_100 Hb_000317_490--Hb_000072_070 Hb_000575_030 Hb_000575_030 Hb_000317_490--Hb_000575_030 Hb_009510_020--Hb_001153_150 Hb_009510_020--Hb_000258_330 Hb_003582_040 Hb_003582_040 Hb_009510_020--Hb_003582_040 Hb_004883_030 Hb_004883_030 Hb_009510_020--Hb_004883_030 Hb_001247_100 Hb_001247_100 Hb_009510_020--Hb_001247_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.31126 0.713654 0.903776 1.59278 0.0312326 0.350989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73156 0.391403 1.93458 0.558894 1.10573

CAGE analysis