Hb_003333_010

Information

Type -
Description -
Location Contig3333: 2160-5554
Sequence    

Annotation

kegg
ID fve:101296558
description ankyrin repeat-containing protein At3g12360-like
nr
ID XP_012086093.1
description PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
swissprot
ID A5PMU4
description Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1
trembl
ID D7U4H2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g00920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003333_010 0.0 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
2 Hb_000080_220 0.1786025138 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_014497_120 0.236824604 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
4 Hb_006154_020 0.2429848683 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
5 Hb_006775_030 0.2509475684 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
6 Hb_000708_040 0.2550517203 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000331_460 0.2575507107 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
8 Hb_001004_150 0.2601922025 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
9 Hb_008053_050 0.2620592643 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
10 Hb_000069_670 0.2647259452 - - PREDICTED: uncharacterized protein LOC105642887 [Jatropha curcas]
11 Hb_002732_030 0.269958237 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
12 Hb_001124_100 0.2704356729 - - PREDICTED: vesicle-associated protein 2-2-like isoform X1 [Jatropha curcas]
13 Hb_004117_350 0.2715938995 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
14 Hb_000032_440 0.2782698591 - - protein with unknown function [Ricinus communis]
15 Hb_011380_020 0.285555007 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X4 [Populus euphratica]
16 Hb_002284_310 0.2885157136 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
17 Hb_003780_070 0.2899916733 - - PREDICTED: pirin-like protein [Jatropha curcas]
18 Hb_000175_230 0.2915694364 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
19 Hb_000317_490 0.2928861676 - - Gibberellin receptor GID1, putative [Ricinus communis]
20 Hb_000258_330 0.2937218872 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003333_010 Hb_003333_010 Hb_000080_220 Hb_000080_220 Hb_003333_010--Hb_000080_220 Hb_014497_120 Hb_014497_120 Hb_003333_010--Hb_014497_120 Hb_006154_020 Hb_006154_020 Hb_003333_010--Hb_006154_020 Hb_006775_030 Hb_006775_030 Hb_003333_010--Hb_006775_030 Hb_000708_040 Hb_000708_040 Hb_003333_010--Hb_000708_040 Hb_000331_460 Hb_000331_460 Hb_003333_010--Hb_000331_460 Hb_000080_220--Hb_014497_120 Hb_002732_030 Hb_002732_030 Hb_000080_220--Hb_002732_030 Hb_002471_100 Hb_002471_100 Hb_000080_220--Hb_002471_100 Hb_000317_490 Hb_000317_490 Hb_000080_220--Hb_000317_490 Hb_009510_020 Hb_009510_020 Hb_000080_220--Hb_009510_020 Hb_014497_120--Hb_009510_020 Hb_001153_150 Hb_001153_150 Hb_014497_120--Hb_001153_150 Hb_000914_170 Hb_000914_170 Hb_014497_120--Hb_000914_170 Hb_000032_440 Hb_000032_440 Hb_014497_120--Hb_000032_440 Hb_014497_120--Hb_002732_030 Hb_000258_330 Hb_000258_330 Hb_014497_120--Hb_000258_330 Hb_001124_100 Hb_001124_100 Hb_006154_020--Hb_001124_100 Hb_008699_030 Hb_008699_030 Hb_006154_020--Hb_008699_030 Hb_183086_050 Hb_183086_050 Hb_006154_020--Hb_183086_050 Hb_113818_010 Hb_113818_010 Hb_006154_020--Hb_113818_010 Hb_003687_250 Hb_003687_250 Hb_006154_020--Hb_003687_250 Hb_008053_050 Hb_008053_050 Hb_006154_020--Hb_008053_050 Hb_000752_070 Hb_000752_070 Hb_006775_030--Hb_000752_070 Hb_006775_030--Hb_000080_220 Hb_006775_030--Hb_014497_120 Hb_011380_020 Hb_011380_020 Hb_006775_030--Hb_011380_020 Hb_019837_040 Hb_019837_040 Hb_006775_030--Hb_019837_040 Hb_000708_040--Hb_000032_440 Hb_002284_310 Hb_002284_310 Hb_000708_040--Hb_002284_310 Hb_000708_040--Hb_000317_490 Hb_003688_050 Hb_003688_050 Hb_000708_040--Hb_003688_050 Hb_002234_060 Hb_002234_060 Hb_000708_040--Hb_002234_060 Hb_000708_040--Hb_000331_460 Hb_000331_460--Hb_002284_310 Hb_001004_150 Hb_001004_150 Hb_000331_460--Hb_001004_150 Hb_000331_460--Hb_000032_440 Hb_001545_100 Hb_001545_100 Hb_000331_460--Hb_001545_100 Hb_000603_230 Hb_000603_230 Hb_000331_460--Hb_000603_230 Hb_004225_080 Hb_004225_080 Hb_000331_460--Hb_004225_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11037 0.145909 0.347177 1.27032 0.0106496 0.110361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42648 0.209255 1.5485 0.151458 1.28406

CAGE analysis