Hb_006775_030

Information

Type -
Description -
Location Contig6775: 22919-25135
Sequence    

Annotation

kegg
ID tcc:TCM_029596
description K-box region and MADS-box transcription factor family protein isoform 1
nr
ID AHH28310.1
description MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
swissprot
ID Q40872
description Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1
trembl
ID A0A023JBP4
description MADS-box transcription factor (Fragment) OS=Clutia sp. DAV B80.252/F1980.8371 PE=2 SV=1
Gene Ontology
ID GO:0005634
description mads-box transcription partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53609: 10476-25373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006775_030 0.0 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
2 Hb_003333_010 0.2509475684 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
3 Hb_000752_070 0.2926671058 - - PREDICTED: mavicyanin-like [Jatropha curcas]
4 Hb_000080_220 0.3016968202 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_014497_120 0.3082700315 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
6 Hb_011380_020 0.3227168949 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X4 [Populus euphratica]
7 Hb_019837_040 0.3446813223 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
8 Hb_003589_080 0.3506459112 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
9 Hb_012368_010 0.3547858332 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_002732_030 0.3583217348 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
11 Hb_014834_010 0.3612284947 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
12 Hb_003641_030 0.363333475 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
13 Hb_000331_460 0.3649584548 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
14 Hb_033354_020 0.3657331257 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_011379_010 0.3665894446 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_006154_020 0.3672631306 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
17 Hb_000105_100 0.367543898 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
18 Hb_140439_010 0.3679369088 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
19 Hb_000122_120 0.3695934089 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
20 Hb_000032_440 0.370838457 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_006775_030 Hb_006775_030 Hb_003333_010 Hb_003333_010 Hb_006775_030--Hb_003333_010 Hb_000752_070 Hb_000752_070 Hb_006775_030--Hb_000752_070 Hb_000080_220 Hb_000080_220 Hb_006775_030--Hb_000080_220 Hb_014497_120 Hb_014497_120 Hb_006775_030--Hb_014497_120 Hb_011380_020 Hb_011380_020 Hb_006775_030--Hb_011380_020 Hb_019837_040 Hb_019837_040 Hb_006775_030--Hb_019837_040 Hb_003333_010--Hb_000080_220 Hb_003333_010--Hb_014497_120 Hb_006154_020 Hb_006154_020 Hb_003333_010--Hb_006154_020 Hb_000708_040 Hb_000708_040 Hb_003333_010--Hb_000708_040 Hb_000331_460 Hb_000331_460 Hb_003333_010--Hb_000331_460 Hb_004162_260 Hb_004162_260 Hb_000752_070--Hb_004162_260 Hb_024154_020 Hb_024154_020 Hb_000752_070--Hb_024154_020 Hb_014834_010 Hb_014834_010 Hb_000752_070--Hb_014834_010 Hb_002843_080 Hb_002843_080 Hb_000752_070--Hb_002843_080 Hb_001059_170 Hb_001059_170 Hb_000752_070--Hb_001059_170 Hb_002843_070 Hb_002843_070 Hb_000752_070--Hb_002843_070 Hb_000080_220--Hb_014497_120 Hb_002732_030 Hb_002732_030 Hb_000080_220--Hb_002732_030 Hb_002471_100 Hb_002471_100 Hb_000080_220--Hb_002471_100 Hb_000317_490 Hb_000317_490 Hb_000080_220--Hb_000317_490 Hb_009510_020 Hb_009510_020 Hb_000080_220--Hb_009510_020 Hb_014497_120--Hb_009510_020 Hb_001153_150 Hb_001153_150 Hb_014497_120--Hb_001153_150 Hb_000914_170 Hb_000914_170 Hb_014497_120--Hb_000914_170 Hb_000032_440 Hb_000032_440 Hb_014497_120--Hb_000032_440 Hb_014497_120--Hb_002732_030 Hb_000258_330 Hb_000258_330 Hb_014497_120--Hb_000258_330 Hb_000072_070 Hb_000072_070 Hb_011380_020--Hb_000072_070 Hb_004680_080 Hb_004680_080 Hb_011380_020--Hb_004680_080 Hb_000575_030 Hb_000575_030 Hb_011380_020--Hb_000575_030 Hb_011380_020--Hb_000317_490 Hb_011316_100 Hb_011316_100 Hb_011380_020--Hb_011316_100 Hb_008062_040 Hb_008062_040 Hb_011380_020--Hb_008062_040 Hb_000105_100 Hb_000105_100 Hb_019837_040--Hb_000105_100 Hb_169116_010 Hb_169116_010 Hb_019837_040--Hb_169116_010 Hb_004689_040 Hb_004689_040 Hb_019837_040--Hb_004689_040 Hb_003641_030 Hb_003641_030 Hb_019837_040--Hb_003641_030 Hb_009178_070 Hb_009178_070 Hb_019837_040--Hb_009178_070 Hb_001488_030 Hb_001488_030 Hb_019837_040--Hb_001488_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.352555 0 0.166019 0.351883 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470509 0 0.20444 0 0.225208

CAGE analysis