Hb_000331_120

Information

Type -
Description -
Location Contig331: 110423-111956
Sequence    

Annotation

kegg
ID rcu:RCOM_1506600
description hypothetical protein
nr
ID XP_002511205.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAI0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34761: 109932-111624 , PASA_asmbl_34762: 112676-114456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001723_120 0.252723968 - - conserved hypothetical protein [Ricinus communis]
3 Hb_080128_020 0.2760414414 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009510_020 0.2908085128 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
5 Hb_000224_100 0.2916583154 - - -
6 Hb_000080_220 0.2923365589 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_007919_020 0.2971289071 - - electron transporter, putative [Ricinus communis]
8 Hb_001638_230 0.297861643 - - RNA-binding region-containing protein, putative [Ricinus communis]
9 Hb_014497_120 0.2996226204 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
10 Hb_001314_030 0.3025521744 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
11 Hb_002732_030 0.3061745002 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
12 Hb_001898_150 0.3069008313 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
13 Hb_002539_100 0.3072462829 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
14 Hb_003589_080 0.3093063495 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
15 Hb_005306_010 0.3100776662 - - -
16 Hb_058620_060 0.3115526817 - - uncharacterized protein LOC105646159 precursor [Jatropha curcas]
17 Hb_024879_010 0.3129976648 - - unknown [Glycine max]
18 Hb_062038_010 0.3130630105 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
19 Hb_000457_210 0.3192689512 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
20 Hb_001449_010 0.321655856 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000331_120 Hb_000331_120 Hb_001723_120 Hb_001723_120 Hb_000331_120--Hb_001723_120 Hb_080128_020 Hb_080128_020 Hb_000331_120--Hb_080128_020 Hb_009510_020 Hb_009510_020 Hb_000331_120--Hb_009510_020 Hb_000224_100 Hb_000224_100 Hb_000331_120--Hb_000224_100 Hb_000080_220 Hb_000080_220 Hb_000331_120--Hb_000080_220 Hb_007919_020 Hb_007919_020 Hb_000331_120--Hb_007919_020 Hb_003910_010 Hb_003910_010 Hb_001723_120--Hb_003910_010 Hb_000863_030 Hb_000863_030 Hb_001723_120--Hb_000863_030 Hb_003893_140 Hb_003893_140 Hb_001723_120--Hb_003893_140 Hb_001476_060 Hb_001476_060 Hb_001723_120--Hb_001476_060 Hb_002301_360 Hb_002301_360 Hb_001723_120--Hb_002301_360 Hb_000482_020 Hb_000482_020 Hb_080128_020--Hb_000482_020 Hb_000976_160 Hb_000976_160 Hb_080128_020--Hb_000976_160 Hb_080128_020--Hb_009510_020 Hb_001153_150 Hb_001153_150 Hb_080128_020--Hb_001153_150 Hb_074783_010 Hb_074783_010 Hb_080128_020--Hb_074783_010 Hb_001146_010 Hb_001146_010 Hb_080128_020--Hb_001146_010 Hb_009510_020--Hb_001153_150 Hb_000258_330 Hb_000258_330 Hb_009510_020--Hb_000258_330 Hb_003582_040 Hb_003582_040 Hb_009510_020--Hb_003582_040 Hb_014497_120 Hb_014497_120 Hb_009510_020--Hb_014497_120 Hb_004883_030 Hb_004883_030 Hb_009510_020--Hb_004883_030 Hb_001247_100 Hb_001247_100 Hb_009510_020--Hb_001247_100 Hb_006120_110 Hb_006120_110 Hb_000224_100--Hb_006120_110 Hb_000613_210 Hb_000613_210 Hb_000224_100--Hb_000613_210 Hb_024682_020 Hb_024682_020 Hb_000224_100--Hb_024682_020 Hb_000005_400 Hb_000005_400 Hb_000224_100--Hb_000005_400 Hb_004899_310 Hb_004899_310 Hb_000224_100--Hb_004899_310 Hb_003333_010 Hb_003333_010 Hb_000080_220--Hb_003333_010 Hb_000080_220--Hb_014497_120 Hb_002732_030 Hb_002732_030 Hb_000080_220--Hb_002732_030 Hb_002471_100 Hb_002471_100 Hb_000080_220--Hb_002471_100 Hb_000317_490 Hb_000317_490 Hb_000080_220--Hb_000317_490 Hb_000080_220--Hb_009510_020 Hb_001946_220 Hb_001946_220 Hb_007919_020--Hb_001946_220 Hb_000270_180 Hb_000270_180 Hb_007919_020--Hb_000270_180 Hb_000368_030 Hb_000368_030 Hb_007919_020--Hb_000368_030 Hb_001205_080 Hb_001205_080 Hb_007919_020--Hb_001205_080 Hb_000742_010 Hb_000742_010 Hb_007919_020--Hb_000742_010 Hb_000648_050 Hb_000648_050 Hb_007919_020--Hb_000648_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.27595 0.0641465 0.118767 0.209346 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.175789 0.0690903 0.122417 0.112751 0

CAGE analysis