Hb_001408_070

Information

Type -
Description -
Location Contig1408: 50675-51951
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11032: 48240-52333
cDNA
(Sanger)
(ID:Location)		 025_M05.ab1: 49038-52263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_070 0.0 - - -
2 Hb_000077_200 0.2269416217 - - PREDICTED: thioredoxin [Jatropha curcas]
3 Hb_008206_100 0.2384940286 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
4 Hb_000240_100 0.2399083667 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
5 Hb_012753_030 0.2426905706 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
6 Hb_001195_490 0.2574566537 - - hypothetical protein glysoja_018593 [Glycine soja]
7 Hb_000174_040 0.2615186037 - - -
8 Hb_027760_020 0.2636789817 - - hypothetical protein M569_04462, partial [Genlisea aurea]
9 Hb_011512_050 0.2691493216 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
10 Hb_000260_790 0.2717017277 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
11 Hb_000016_170 0.2770438263 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003103_010 0.2804057744 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002154_110 0.283743065 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
14 Hb_007894_230 0.2841539727 - - 30S ribosomal protein S14, putative [Ricinus communis]
15 Hb_001208_030 0.2844427159 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000240_120 0.2850067138 - - ras-related protein Rab-5B [Reticulomyxa filosa]
17 Hb_001163_040 0.2872574031 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
18 Hb_002126_010 0.2874804712 - - predicted protein [Hordeum vulgare subsp. vulgare]
19 Hb_000217_010 0.2879042303 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
20 Hb_002320_080 0.2884518633 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001408_070 Hb_001408_070 Hb_000077_200 Hb_000077_200 Hb_001408_070--Hb_000077_200 Hb_008206_100 Hb_008206_100 Hb_001408_070--Hb_008206_100 Hb_000240_100 Hb_000240_100 Hb_001408_070--Hb_000240_100 Hb_012753_030 Hb_012753_030 Hb_001408_070--Hb_012753_030 Hb_001195_490 Hb_001195_490 Hb_001408_070--Hb_001195_490 Hb_000174_040 Hb_000174_040 Hb_001408_070--Hb_000174_040 Hb_000016_170 Hb_000016_170 Hb_000077_200--Hb_000016_170 Hb_002320_080 Hb_002320_080 Hb_000077_200--Hb_002320_080 Hb_000946_100 Hb_000946_100 Hb_000077_200--Hb_000946_100 Hb_005167_030 Hb_005167_030 Hb_000077_200--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_000077_200--Hb_002154_110 Hb_022593_010 Hb_022593_010 Hb_000077_200--Hb_022593_010 Hb_008206_100--Hb_002154_110 Hb_003103_010 Hb_003103_010 Hb_008206_100--Hb_003103_010 Hb_175933_010 Hb_175933_010 Hb_008206_100--Hb_175933_010 Hb_000260_790 Hb_000260_790 Hb_008206_100--Hb_000260_790 Hb_003994_020 Hb_003994_020 Hb_008206_100--Hb_003994_020 Hb_008642_030 Hb_008642_030 Hb_008206_100--Hb_008642_030 Hb_011512_050 Hb_011512_050 Hb_000240_100--Hb_011512_050 Hb_000369_120 Hb_000369_120 Hb_000240_100--Hb_000369_120 Hb_001969_020 Hb_001969_020 Hb_000240_100--Hb_001969_020 Hb_027760_020 Hb_027760_020 Hb_000240_100--Hb_027760_020 Hb_000217_010 Hb_000217_010 Hb_000240_100--Hb_000217_010 Hb_000240_120 Hb_000240_120 Hb_000240_100--Hb_000240_120 Hb_029920_020 Hb_029920_020 Hb_012753_030--Hb_029920_020 Hb_001208_030 Hb_001208_030 Hb_012753_030--Hb_001208_030 Hb_000192_020 Hb_000192_020 Hb_012753_030--Hb_000192_020 Hb_001584_240 Hb_001584_240 Hb_012753_030--Hb_001584_240 Hb_001486_270 Hb_001486_270 Hb_012753_030--Hb_001486_270 Hb_012753_030--Hb_175933_010 Hb_001195_490--Hb_000260_790 Hb_001935_150 Hb_001935_150 Hb_001195_490--Hb_001935_150 Hb_000049_050 Hb_000049_050 Hb_001195_490--Hb_000049_050 Hb_000975_230 Hb_000975_230 Hb_001195_490--Hb_000975_230 Hb_002631_260 Hb_002631_260 Hb_001195_490--Hb_002631_260 Hb_077399_010 Hb_077399_010 Hb_001195_490--Hb_077399_010 Hb_002482_040 Hb_002482_040 Hb_000174_040--Hb_002482_040 Hb_025190_010 Hb_025190_010 Hb_000174_040--Hb_025190_010 Hb_000174_040--Hb_001195_490 Hb_076175_010 Hb_076175_010 Hb_000174_040--Hb_076175_010 Hb_002078_260 Hb_002078_260 Hb_000174_040--Hb_002078_260 Hb_000174_040--Hb_027760_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.47667 0 0.397313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246205 1.16074 0.298587 0.255087 0.653675

CAGE analysis