Hb_001247_300

Information

Type -
Description -
Location Contig1247: 223629-227417
Sequence    

Annotation

kegg
ID rcu:RCOM_1436680
description Aspartic proteinase precursor, putative (EC:3.4.23.40)
nr
ID KDP23334.1
description hypothetical protein JCGZ_23167 [Jatropha curcas]
swissprot
ID P42211
description Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2
trembl
ID A0A067JUW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23167 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07503: 226543-226731 , PASA_asmbl_07504: 226754-227453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_300 0.0 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
2 Hb_001006_270 0.1279671986 - - peptide transporter, putative [Ricinus communis]
3 Hb_000155_110 0.1296712437 - - Auxin response factor, putative [Ricinus communis]
4 Hb_002686_310 0.1304743883 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
5 Hb_002477_040 0.1311628024 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
6 Hb_000915_240 0.1426853731 - - catalytic, putative [Ricinus communis]
7 Hb_001437_190 0.1492507743 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_004094_020 0.1505116883 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
9 Hb_069619_010 0.151982399 - - Aspartic proteinase precursor, putative [Ricinus communis]
10 Hb_002851_010 0.1534219198 - - sugar transporter, putative [Ricinus communis]
11 Hb_143629_130 0.1535229741 - - unnamed protein product [Coffea canephora]
12 Hb_000035_330 0.1535523251 - - Transmembrane protein 85 [Theobroma cacao]
13 Hb_001369_360 0.1544400783 - - embryo yellow protein, partial [Manihot esculenta]
14 Hb_003055_040 0.1566587165 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
15 Hb_000237_040 0.1568682492 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
16 Hb_075315_010 0.1577344931 - - ornithine aminotransferase [Camellia sinensis]
17 Hb_021297_020 0.15992807 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
18 Hb_000692_160 0.1651369435 - - Transportin 1 isoform 1 [Theobroma cacao]
19 Hb_001780_150 0.1652877225 - - ceramidase, putative [Ricinus communis]
20 Hb_000723_010 0.165882516 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001247_300 Hb_001247_300 Hb_001006_270 Hb_001006_270 Hb_001247_300--Hb_001006_270 Hb_000155_110 Hb_000155_110 Hb_001247_300--Hb_000155_110 Hb_002686_310 Hb_002686_310 Hb_001247_300--Hb_002686_310 Hb_002477_040 Hb_002477_040 Hb_001247_300--Hb_002477_040 Hb_000915_240 Hb_000915_240 Hb_001247_300--Hb_000915_240 Hb_001437_190 Hb_001437_190 Hb_001247_300--Hb_001437_190 Hb_000928_190 Hb_000928_190 Hb_001006_270--Hb_000928_190 Hb_001481_150 Hb_001481_150 Hb_001006_270--Hb_001481_150 Hb_000035_330 Hb_000035_330 Hb_001006_270--Hb_000035_330 Hb_000237_050 Hb_000237_050 Hb_001006_270--Hb_000237_050 Hb_004094_020 Hb_004094_020 Hb_001006_270--Hb_004094_020 Hb_000701_030 Hb_000701_030 Hb_001006_270--Hb_000701_030 Hb_000155_110--Hb_002686_310 Hb_003055_040 Hb_003055_040 Hb_000155_110--Hb_003055_040 Hb_002693_060 Hb_002693_060 Hb_000155_110--Hb_002693_060 Hb_002414_060 Hb_002414_060 Hb_000155_110--Hb_002414_060 Hb_005081_020 Hb_005081_020 Hb_000155_110--Hb_005081_020 Hb_007558_100 Hb_007558_100 Hb_002686_310--Hb_007558_100 Hb_075315_010 Hb_075315_010 Hb_002686_310--Hb_075315_010 Hb_002686_310--Hb_003055_040 Hb_002686_310--Hb_000915_240 Hb_179306_020 Hb_179306_020 Hb_002686_310--Hb_179306_020 Hb_143629_130 Hb_143629_130 Hb_002686_310--Hb_143629_130 Hb_002213_090 Hb_002213_090 Hb_002477_040--Hb_002213_090 Hb_002477_040--Hb_002686_310 Hb_002928_200 Hb_002928_200 Hb_002477_040--Hb_002928_200 Hb_002851_010 Hb_002851_010 Hb_002477_040--Hb_002851_010 Hb_000723_010 Hb_000723_010 Hb_002477_040--Hb_000723_010 Hb_135959_010 Hb_135959_010 Hb_002477_040--Hb_135959_010 Hb_001369_360 Hb_001369_360 Hb_000915_240--Hb_001369_360 Hb_000109_170 Hb_000109_170 Hb_000915_240--Hb_000109_170 Hb_000352_300 Hb_000352_300 Hb_000915_240--Hb_000352_300 Hb_000130_180 Hb_000130_180 Hb_000915_240--Hb_000130_180 Hb_001014_210 Hb_001014_210 Hb_000915_240--Hb_001014_210 Hb_002284_250 Hb_002284_250 Hb_001437_190--Hb_002284_250 Hb_001437_190--Hb_000237_050 Hb_000237_040 Hb_000237_040 Hb_001437_190--Hb_000237_040 Hb_001195_470 Hb_001195_470 Hb_001437_190--Hb_001195_470 Hb_000062_020 Hb_000062_020 Hb_001437_190--Hb_000062_020 Hb_001821_150 Hb_001821_150 Hb_001437_190--Hb_001821_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58791 5.21392 1.30738 14.2954 4.83168 8.0751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.68461 1.81557 3.31183 13.4789 6.09021

CAGE analysis