Hb_001148_080

Information

Type -
Description -
Location Contig1148: 87390-89483
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID KDP42480.1
description hypothetical protein JCGZ_00277 [Jatropha curcas]
swissprot
ID Q8AVI4
description Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001148_080 0.0 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
2 Hb_000940_170 0.1531121791 - - hypothetical protein VITISV_029834 [Vitis vinifera]
3 Hb_169656_010 0.1594307698 - - protein phosphatase, putative [Ricinus communis]
4 Hb_005892_020 0.1716538662 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
5 Hb_059741_010 0.1880504645 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
6 Hb_132101_010 0.1887238961 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
7 Hb_021297_020 0.1914712005 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
8 Hb_001437_140 0.1926834262 - - -
9 Hb_001689_040 0.19775395 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
10 Hb_000022_140 0.1979828981 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
11 Hb_002026_070 0.1981055565 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
12 Hb_004116_170 0.1990895651 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
13 Hb_000244_260 0.1996536804 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
14 Hb_014497_060 0.2011655133 - - phosphofructokinase, putative [Ricinus communis]
15 Hb_022092_010 0.2036860743 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
16 Hb_003490_050 0.2049270384 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
17 Hb_001210_040 0.2054313993 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
18 Hb_085187_010 0.2108683106 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_002232_490 0.2113533651 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
20 Hb_001366_270 0.2119742093 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]

Gene co-expression network

sample Hb_001148_080 Hb_001148_080 Hb_000940_170 Hb_000940_170 Hb_001148_080--Hb_000940_170 Hb_169656_010 Hb_169656_010 Hb_001148_080--Hb_169656_010 Hb_005892_020 Hb_005892_020 Hb_001148_080--Hb_005892_020 Hb_059741_010 Hb_059741_010 Hb_001148_080--Hb_059741_010 Hb_132101_010 Hb_132101_010 Hb_001148_080--Hb_132101_010 Hb_021297_020 Hb_021297_020 Hb_001148_080--Hb_021297_020 Hb_000940_170--Hb_005892_020 Hb_003058_200 Hb_003058_200 Hb_000940_170--Hb_003058_200 Hb_000800_110 Hb_000800_110 Hb_000940_170--Hb_000800_110 Hb_000940_170--Hb_021297_020 Hb_169586_010 Hb_169586_010 Hb_000940_170--Hb_169586_010 Hb_002851_010 Hb_002851_010 Hb_000940_170--Hb_002851_010 Hb_000254_070 Hb_000254_070 Hb_169656_010--Hb_000254_070 Hb_169656_010--Hb_132101_010 Hb_011214_110 Hb_011214_110 Hb_169656_010--Hb_011214_110 Hb_014497_060 Hb_014497_060 Hb_169656_010--Hb_014497_060 Hb_001689_040 Hb_001689_040 Hb_169656_010--Hb_001689_040 Hb_000244_260 Hb_000244_260 Hb_169656_010--Hb_000244_260 Hb_005892_020--Hb_021297_020 Hb_000022_160 Hb_000022_160 Hb_005892_020--Hb_000022_160 Hb_001381_050 Hb_001381_050 Hb_005892_020--Hb_001381_050 Hb_005892_020--Hb_003058_200 Hb_012738_030 Hb_012738_030 Hb_005892_020--Hb_012738_030 Hb_011310_050 Hb_011310_050 Hb_059741_010--Hb_011310_050 Hb_000679_040 Hb_000679_040 Hb_059741_010--Hb_000679_040 Hb_001216_110 Hb_001216_110 Hb_059741_010--Hb_001216_110 Hb_059741_010--Hb_000244_260 Hb_177343_010 Hb_177343_010 Hb_059741_010--Hb_177343_010 Hb_001210_040 Hb_001210_040 Hb_059741_010--Hb_001210_040 Hb_183867_010 Hb_183867_010 Hb_132101_010--Hb_183867_010 Hb_013358_050 Hb_013358_050 Hb_132101_010--Hb_013358_050 Hb_022092_010 Hb_022092_010 Hb_132101_010--Hb_022092_010 Hb_000157_070 Hb_000157_070 Hb_132101_010--Hb_000157_070 Hb_004837_280 Hb_004837_280 Hb_132101_010--Hb_004837_280 Hb_002808_020 Hb_002808_020 Hb_132101_010--Hb_002808_020 Hb_000649_060 Hb_000649_060 Hb_021297_020--Hb_000649_060 Hb_027445_020 Hb_027445_020 Hb_021297_020--Hb_027445_020 Hb_000674_010 Hb_000674_010 Hb_021297_020--Hb_000674_010 Hb_000701_030 Hb_000701_030 Hb_021297_020--Hb_000701_030 Hb_021297_020--Hb_003058_200 Hb_001226_130 Hb_001226_130 Hb_021297_020--Hb_001226_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10442 0.504103 0.852285 1.643 0.322396 1.25956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.273575 0 0.777494 1.95971 1.94115

CAGE analysis