Hb_000883_160

Information

Type -
Description -
Location Contig883: 207555-210665
Sequence    

Annotation

kegg
ID rcu:RCOM_0856140
description Beta-amylase, putative (EC:3.2.1.2)
nr
ID XP_012075356.1
description PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
swissprot
ID O23553
description Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3
trembl
ID A0A067LBX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11889 PE=3 SV=1
Gene Ontology
ID GO:0009570
description chloroplast beta-amylase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61464: 208070-208256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000883_160 0.0 - - PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
2 Hb_130469_010 0.2605805302 - - pleiotropic drug resistance ABC transporter family protein, partial [Eleutherococcus senticosus]
3 Hb_003401_010 0.2694662885 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
4 Hb_027472_110 0.27134536 - - Patellin-4, putative [Ricinus communis]
5 Hb_005694_050 0.2835229408 - - NC domain-containing family protein [Populus trichocarpa]
6 Hb_000077_170 0.2926529933 - - PREDICTED: GPI-anchored protein LORELEI-like [Jatropha curcas]
7 Hb_003905_020 0.300019457 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
8 Hb_010638_010 0.3027054915 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
9 Hb_000961_060 0.3037764348 - - uvb-resistance protein uvr8, putative [Ricinus communis]
10 Hb_000009_370 0.3050510466 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
11 Hb_180924_010 0.3057695466 - - CPI-4 [Morus alba var. atropurpurea]
12 Hb_028621_030 0.3074102522 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
13 Hb_001379_120 0.3157733802 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
14 Hb_007100_020 0.3168087623 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
15 Hb_002601_050 0.3215284584 - - Boron transporter, putative [Ricinus communis]
16 Hb_012092_020 0.3255236624 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_006570_040 0.3275841085 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
18 Hb_004918_010 0.3300683965 - - protein binding protein, putative [Ricinus communis]
19 Hb_002979_030 0.3308302728 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
20 Hb_005946_020 0.3316737116 - - Pleiotropic drug resistance protein 4 [Triticum urartu]

Gene co-expression network

sample Hb_000883_160 Hb_000883_160 Hb_130469_010 Hb_130469_010 Hb_000883_160--Hb_130469_010 Hb_003401_010 Hb_003401_010 Hb_000883_160--Hb_003401_010 Hb_027472_110 Hb_027472_110 Hb_000883_160--Hb_027472_110 Hb_005694_050 Hb_005694_050 Hb_000883_160--Hb_005694_050 Hb_000077_170 Hb_000077_170 Hb_000883_160--Hb_000077_170 Hb_003905_020 Hb_003905_020 Hb_000883_160--Hb_003905_020 Hb_006501_130 Hb_006501_130 Hb_130469_010--Hb_006501_130 Hb_002759_080 Hb_002759_080 Hb_130469_010--Hb_002759_080 Hb_010638_010 Hb_010638_010 Hb_130469_010--Hb_010638_010 Hb_002499_050 Hb_002499_050 Hb_130469_010--Hb_002499_050 Hb_001379_120 Hb_001379_120 Hb_130469_010--Hb_001379_120 Hb_000638_220 Hb_000638_220 Hb_130469_010--Hb_000638_220 Hb_002979_030 Hb_002979_030 Hb_003401_010--Hb_002979_030 Hb_006570_040 Hb_006570_040 Hb_003401_010--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_003401_010--Hb_000028_240 Hb_003401_010--Hb_027472_110 Hb_002639_170 Hb_002639_170 Hb_003401_010--Hb_002639_170 Hb_005162_120 Hb_005162_120 Hb_003401_010--Hb_005162_120 Hb_027472_110--Hb_005694_050 Hb_054865_010 Hb_054865_010 Hb_027472_110--Hb_054865_010 Hb_004116_100 Hb_004116_100 Hb_027472_110--Hb_004116_100 Hb_002078_120 Hb_002078_120 Hb_027472_110--Hb_002078_120 Hb_002007_040 Hb_002007_040 Hb_027472_110--Hb_002007_040 Hb_082655_010 Hb_082655_010 Hb_005694_050--Hb_082655_010 Hb_002045_090 Hb_002045_090 Hb_005694_050--Hb_002045_090 Hb_005694_050--Hb_010638_010 Hb_002272_220 Hb_002272_220 Hb_005694_050--Hb_002272_220 Hb_089966_010 Hb_089966_010 Hb_005694_050--Hb_089966_010 Hb_000000_180 Hb_000000_180 Hb_005694_050--Hb_000000_180 Hb_002601_050 Hb_002601_050 Hb_000077_170--Hb_002601_050 Hb_004918_010 Hb_004918_010 Hb_000077_170--Hb_004918_010 Hb_081930_010 Hb_081930_010 Hb_000077_170--Hb_081930_010 Hb_001140_050 Hb_001140_050 Hb_000077_170--Hb_001140_050 Hb_000077_170--Hb_010638_010 Hb_000077_170--Hb_003905_020 Hb_002307_190 Hb_002307_190 Hb_003905_020--Hb_002307_190 Hb_003905_020--Hb_002759_080 Hb_006916_080 Hb_006916_080 Hb_003905_020--Hb_006916_080 Hb_000393_040 Hb_000393_040 Hb_003905_020--Hb_000393_040 Hb_003905_020--Hb_010638_010 Hb_003905_020--Hb_001379_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.548898 0.15879 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.281795 0.0221706 0 0 0.139642

CAGE analysis