Hb_000879_150

Information

Type -
Description -
Location Contig879: 203357-204445
Sequence    

Annotation

kegg
ID rcu:RCOM_1587270
description hypothetical protein
nr
ID XP_002510084.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R6Z1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61350: 198897-207314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000424_030 0.1562683473 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003462_080 0.1631400415 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
4 Hb_001951_190 0.1756273623 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
5 Hb_002078_290 0.1826307173 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
6 Hb_000028_430 0.1838635591 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
7 Hb_000177_110 0.1852442644 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
8 Hb_000077_160 0.1855162583 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
9 Hb_001864_080 0.1858113162 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
10 Hb_000056_190 0.1870538029 - - hypothetical protein [Ricinus communis]
11 Hb_000330_020 0.1873524744 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
12 Hb_002325_060 0.187689356 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
13 Hb_006925_050 0.1963832324 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
14 Hb_000109_190 0.1973941771 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
15 Hb_000622_330 0.1986059166 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
16 Hb_003001_130 0.1991576171 - - conserved hypothetical protein [Ricinus communis]
17 Hb_105033_010 0.20019092 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
18 Hb_084147_010 0.2018166117 - - amino acid transporter, putative [Ricinus communis]
19 Hb_001250_080 0.2023048825 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
20 Hb_000086_320 0.2034392922 - - hypothetical protein JCGZ_17661 [Jatropha curcas]

Gene co-expression network

sample Hb_000879_150 Hb_000879_150 Hb_000424_030 Hb_000424_030 Hb_000879_150--Hb_000424_030 Hb_003462_080 Hb_003462_080 Hb_000879_150--Hb_003462_080 Hb_001951_190 Hb_001951_190 Hb_000879_150--Hb_001951_190 Hb_002078_290 Hb_002078_290 Hb_000879_150--Hb_002078_290 Hb_000028_430 Hb_000028_430 Hb_000879_150--Hb_000028_430 Hb_000177_110 Hb_000177_110 Hb_000879_150--Hb_000177_110 Hb_006829_070 Hb_006829_070 Hb_000424_030--Hb_006829_070 Hb_000603_020 Hb_000603_020 Hb_000424_030--Hb_000603_020 Hb_000271_220 Hb_000271_220 Hb_000424_030--Hb_000271_220 Hb_002217_320 Hb_002217_320 Hb_000424_030--Hb_002217_320 Hb_000622_330 Hb_000622_330 Hb_000424_030--Hb_000622_330 Hb_006925_050 Hb_006925_050 Hb_000424_030--Hb_006925_050 Hb_011310_180 Hb_011310_180 Hb_003462_080--Hb_011310_180 Hb_000808_150 Hb_000808_150 Hb_003462_080--Hb_000808_150 Hb_000246_130 Hb_000246_130 Hb_003462_080--Hb_000246_130 Hb_004449_250 Hb_004449_250 Hb_003462_080--Hb_004449_250 Hb_011360_110 Hb_011360_110 Hb_003462_080--Hb_011360_110 Hb_000320_350 Hb_000320_350 Hb_003462_080--Hb_000320_350 Hb_005245_140 Hb_005245_140 Hb_001951_190--Hb_005245_140 Hb_000479_060 Hb_000479_060 Hb_001951_190--Hb_000479_060 Hb_003266_090 Hb_003266_090 Hb_001951_190--Hb_003266_090 Hb_003581_050 Hb_003581_050 Hb_001951_190--Hb_003581_050 Hb_001951_190--Hb_000424_030 Hb_003929_230 Hb_003929_230 Hb_001951_190--Hb_003929_230 Hb_000077_160 Hb_000077_160 Hb_002078_290--Hb_000077_160 Hb_003849_190 Hb_003849_190 Hb_002078_290--Hb_003849_190 Hb_002078_290--Hb_000028_430 Hb_031022_020 Hb_031022_020 Hb_002078_290--Hb_031022_020 Hb_084849_010 Hb_084849_010 Hb_002078_290--Hb_084849_010 Hb_004218_120 Hb_004218_120 Hb_002078_290--Hb_004218_120 Hb_005054_020 Hb_005054_020 Hb_000028_430--Hb_005054_020 Hb_001250_080 Hb_001250_080 Hb_000028_430--Hb_001250_080 Hb_000227_280 Hb_000227_280 Hb_000028_430--Hb_000227_280 Hb_000928_120 Hb_000928_120 Hb_000028_430--Hb_000928_120 Hb_003001_130 Hb_003001_130 Hb_000028_430--Hb_003001_130 Hb_000028_430--Hb_003849_190 Hb_003207_150 Hb_003207_150 Hb_000177_110--Hb_003207_150 Hb_034726_010 Hb_034726_010 Hb_000177_110--Hb_034726_010 Hb_000177_110--Hb_000424_030 Hb_007483_060 Hb_007483_060 Hb_000177_110--Hb_007483_060 Hb_002217_500 Hb_002217_500 Hb_000177_110--Hb_002217_500 Hb_000671_130 Hb_000671_130 Hb_000177_110--Hb_000671_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269211 1.55483 1.3671 3.80388 0.352189 0.134594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.456194 0.825292 0 0.244832 1.77195

CAGE analysis