Hb_000538_170

Information

Type -
Description -
Location Contig538: 163876-165723
Sequence    

Annotation

kegg
ID tcc:TCM_017664
description AMP-dependent synthetase and ligase family protein
nr
ID XP_012074698.1
description PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
swissprot
ID Q9SS00
description Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana GN=AAE12 PE=2 SV=1
trembl
ID A0A061EFH9
description AMP-dependent synthetase and ligase family protein OS=Theobroma cacao GN=TCM_017664 PE=4 SV=1
Gene Ontology
ID GO:0016874
description butyrate-- ligase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47668: 164353-164645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_170 0.0 - - PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
2 Hb_001247_010 0.1618078156 - - galactinol synthase [Manihot esculenta]
3 Hb_000359_080 0.1712360933 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
4 Hb_001369_020 0.1787208567 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
5 Hb_000856_410 0.1803545597 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002341_040 0.1816576109 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
7 Hb_000086_620 0.1831077412 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
8 Hb_028285_020 0.1865308812 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
9 Hb_007193_030 0.1866439018 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
10 Hb_065525_010 0.1891210738 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
11 Hb_062447_010 0.1900021768 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
12 Hb_000156_080 0.1909405289 - - Potassium channel KAT2, putative [Ricinus communis]
13 Hb_003905_040 0.1956581121 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
14 Hb_000347_380 0.1957376267 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_027402_100 0.1993311524 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
16 Hb_000172_080 0.2001016628 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
17 Hb_000087_100 0.201782104 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
18 Hb_005656_200 0.201993847 - - Cation transport protein chaC, putative [Ricinus communis]
19 Hb_011457_080 0.2039858504 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
20 Hb_004218_080 0.2040916781 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_170 Hb_000538_170 Hb_001247_010 Hb_001247_010 Hb_000538_170--Hb_001247_010 Hb_000359_080 Hb_000359_080 Hb_000538_170--Hb_000359_080 Hb_001369_020 Hb_001369_020 Hb_000538_170--Hb_001369_020 Hb_000856_410 Hb_000856_410 Hb_000538_170--Hb_000856_410 Hb_002341_040 Hb_002341_040 Hb_000538_170--Hb_002341_040 Hb_000086_620 Hb_000086_620 Hb_000538_170--Hb_000086_620 Hb_001247_010--Hb_000086_620 Hb_000465_100 Hb_000465_100 Hb_001247_010--Hb_000465_100 Hb_097007_020 Hb_097007_020 Hb_001247_010--Hb_097007_020 Hb_000156_080 Hb_000156_080 Hb_001247_010--Hb_000156_080 Hb_005656_200 Hb_005656_200 Hb_001247_010--Hb_005656_200 Hb_003811_030 Hb_003811_030 Hb_001247_010--Hb_003811_030 Hb_000172_080 Hb_000172_080 Hb_000359_080--Hb_000172_080 Hb_000473_080 Hb_000473_080 Hb_000359_080--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000359_080--Hb_029866_050 Hb_000003_420 Hb_000003_420 Hb_000359_080--Hb_000003_420 Hb_000103_400 Hb_000103_400 Hb_000359_080--Hb_000103_400 Hb_000363_110 Hb_000363_110 Hb_000359_080--Hb_000363_110 Hb_073171_050 Hb_073171_050 Hb_001369_020--Hb_073171_050 Hb_007193_030 Hb_007193_030 Hb_001369_020--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_001369_020--Hb_028285_020 Hb_005080_020 Hb_005080_020 Hb_001369_020--Hb_005080_020 Hb_001623_410 Hb_001623_410 Hb_001369_020--Hb_001623_410 Hb_003905_040 Hb_003905_040 Hb_001369_020--Hb_003905_040 Hb_008253_040 Hb_008253_040 Hb_000856_410--Hb_008253_040 Hb_000856_410--Hb_000172_080 Hb_004030_070 Hb_004030_070 Hb_000856_410--Hb_004030_070 Hb_072276_010 Hb_072276_010 Hb_000856_410--Hb_072276_010 Hb_078901_010 Hb_078901_010 Hb_000856_410--Hb_078901_010 Hb_004166_010 Hb_004166_010 Hb_000856_410--Hb_004166_010 Hb_004945_050 Hb_004945_050 Hb_002341_040--Hb_004945_050 Hb_008550_030 Hb_008550_030 Hb_002341_040--Hb_008550_030 Hb_000060_100 Hb_000060_100 Hb_002341_040--Hb_000060_100 Hb_001677_120 Hb_001677_120 Hb_002341_040--Hb_001677_120 Hb_001534_150 Hb_001534_150 Hb_002341_040--Hb_001534_150 Hb_002097_210 Hb_002097_210 Hb_002341_040--Hb_002097_210 Hb_000086_620--Hb_001623_410 Hb_011930_120 Hb_011930_120 Hb_000086_620--Hb_011930_120 Hb_001989_060 Hb_001989_060 Hb_000086_620--Hb_001989_060 Hb_010126_030 Hb_010126_030 Hb_000086_620--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_000086_620--Hb_000451_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.21784 0.384104 0.245191 0.0351032 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0265781 0.0209112 0.118451 0.0749889 0.351883

CAGE analysis