Hb_000248_110

Information

Type -
Description -
Location Contig248: 204640-208321
Sequence    

Annotation

kegg
ID csv:101219957
description uncharacterized LOC101219957
nr
ID CAN62127.1
description hypothetical protein VITISV_037580 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C5V8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_110 0.0 - - hypothetical protein VITISV_037580 [Vitis vinifera]
2 Hb_187236_010 0.204308564 - - -
3 Hb_000080_100 0.2578131458 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
4 Hb_001520_030 0.2673600797 transcription factor TF Family: MYB PREDICTED: trichome differentiation protein GL1-like isoform X2 [Populus euphratica]
5 Hb_000152_520 0.2826486727 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
6 Hb_003126_120 0.2832720882 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
7 Hb_017434_080 0.2924392575 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002213_050 0.293278447 - - PREDICTED: uncharacterized protein LOC105630318 isoform X3 [Jatropha curcas]
9 Hb_003554_040 0.2935911667 - - -
10 Hb_000046_390 0.2955553991 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
11 Hb_011224_150 0.2976900622 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
12 Hb_001131_050 0.2994085204 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
13 Hb_002053_170 0.299410863 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000009_250 0.29970357 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_004586_410 0.3009084932 - - ring finger protein, putative [Ricinus communis]
16 Hb_179645_010 0.3014488876 - - -
17 Hb_000638_230 0.3020246191 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_003623_040 0.302259699 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
19 Hb_000664_100 0.3024899414 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
20 Hb_000176_080 0.3049463492 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]

Gene co-expression network

sample Hb_000248_110 Hb_000248_110 Hb_187236_010 Hb_187236_010 Hb_000248_110--Hb_187236_010 Hb_000080_100 Hb_000080_100 Hb_000248_110--Hb_000080_100 Hb_001520_030 Hb_001520_030 Hb_000248_110--Hb_001520_030 Hb_000152_520 Hb_000152_520 Hb_000248_110--Hb_000152_520 Hb_003126_120 Hb_003126_120 Hb_000248_110--Hb_003126_120 Hb_017434_080 Hb_017434_080 Hb_000248_110--Hb_017434_080 Hb_090390_010 Hb_090390_010 Hb_187236_010--Hb_090390_010 Hb_014361_040 Hb_014361_040 Hb_187236_010--Hb_014361_040 Hb_005545_110 Hb_005545_110 Hb_187236_010--Hb_005545_110 Hb_187236_010--Hb_000080_100 Hb_001269_580 Hb_001269_580 Hb_187236_010--Hb_001269_580 Hb_000009_250 Hb_000009_250 Hb_000080_100--Hb_000009_250 Hb_011224_150 Hb_011224_150 Hb_000080_100--Hb_011224_150 Hb_001976_100 Hb_001976_100 Hb_000080_100--Hb_001976_100 Hb_002171_050 Hb_002171_050 Hb_000080_100--Hb_002171_050 Hb_004930_020 Hb_004930_020 Hb_000080_100--Hb_004930_020 Hb_001019_030 Hb_001019_030 Hb_000080_100--Hb_001019_030 Hb_002925_060 Hb_002925_060 Hb_001520_030--Hb_002925_060 Hb_000959_110 Hb_000959_110 Hb_001520_030--Hb_000959_110 Hb_000193_320 Hb_000193_320 Hb_001520_030--Hb_000193_320 Hb_000377_130 Hb_000377_130 Hb_001520_030--Hb_000377_130 Hb_000334_030 Hb_000334_030 Hb_001520_030--Hb_000334_030 Hb_001712_030 Hb_001712_030 Hb_001520_030--Hb_001712_030 Hb_000856_030 Hb_000856_030 Hb_000152_520--Hb_000856_030 Hb_000317_170 Hb_000317_170 Hb_000152_520--Hb_000317_170 Hb_000152_520--Hb_011224_150 Hb_000928_200 Hb_000928_200 Hb_000152_520--Hb_000928_200 Hb_000152_520--Hb_003126_120 Hb_011985_020 Hb_011985_020 Hb_000152_520--Hb_011985_020 Hb_034688_030 Hb_034688_030 Hb_003126_120--Hb_034688_030 Hb_002000_100 Hb_002000_100 Hb_003126_120--Hb_002000_100 Hb_022693_090 Hb_022693_090 Hb_003126_120--Hb_022693_090 Hb_011314_010 Hb_011314_010 Hb_003126_120--Hb_011314_010 Hb_001360_020 Hb_001360_020 Hb_003126_120--Hb_001360_020 Hb_000367_320 Hb_000367_320 Hb_003126_120--Hb_000367_320 Hb_004586_410 Hb_004586_410 Hb_017434_080--Hb_004586_410 Hb_003536_090 Hb_003536_090 Hb_017434_080--Hb_003536_090 Hb_007311_050 Hb_007311_050 Hb_017434_080--Hb_007311_050 Hb_000030_130 Hb_000030_130 Hb_017434_080--Hb_000030_130 Hb_005914_130 Hb_005914_130 Hb_017434_080--Hb_005914_130 Hb_008695_220 Hb_008695_220 Hb_017434_080--Hb_008695_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0298261 0.0238689 0 0.102749 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00856949 0.045186

CAGE analysis