Hb_000152_520

Information

Type transcription factor
Description TF Family: MYB
Location Contig152: 451346-452284
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14600g
description POPTRDRAFT_824864; hypothetical protein
nr
ID XP_002321838.2
description hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
swissprot
ID Q50EX6
description Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1
trembl
ID B9ICU5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s14600g PE=4 SV=2
Gene Ontology
ID GO:0003677
description protein odorant1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_520 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
2 Hb_000856_030 0.119684939 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000317_170 0.1257665153 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_011224_150 0.1267490353 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
5 Hb_000928_200 0.1348849219 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
6 Hb_003126_120 0.1377301017 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
7 Hb_011985_020 0.1417994249 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
8 Hb_000367_080 0.1436240556 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
9 Hb_004785_170 0.1442443275 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_000368_040 0.144769338 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001360_020 0.1473075535 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
12 Hb_008948_010 0.1476493359 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
13 Hb_010217_020 0.1497411579 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
14 Hb_001680_050 0.1506580996 - - -
15 Hb_000953_110 0.1507382203 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
16 Hb_000307_060 0.1509199901 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
17 Hb_180980_010 0.1529828609 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
18 Hb_000030_230 0.153417669 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
19 Hb_011314_010 0.1552847011 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
20 Hb_000000_260 0.1589053638 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_520 Hb_000152_520 Hb_000856_030 Hb_000856_030 Hb_000152_520--Hb_000856_030 Hb_000317_170 Hb_000317_170 Hb_000152_520--Hb_000317_170 Hb_011224_150 Hb_011224_150 Hb_000152_520--Hb_011224_150 Hb_000928_200 Hb_000928_200 Hb_000152_520--Hb_000928_200 Hb_003126_120 Hb_003126_120 Hb_000152_520--Hb_003126_120 Hb_011985_020 Hb_011985_020 Hb_000152_520--Hb_011985_020 Hb_000368_040 Hb_000368_040 Hb_000856_030--Hb_000368_040 Hb_000856_030--Hb_000317_170 Hb_001680_050 Hb_001680_050 Hb_000856_030--Hb_001680_050 Hb_000137_050 Hb_000137_050 Hb_000856_030--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_000856_030--Hb_007579_030 Hb_000197_260 Hb_000197_260 Hb_000856_030--Hb_000197_260 Hb_000000_260 Hb_000000_260 Hb_000317_170--Hb_000000_260 Hb_000317_170--Hb_001680_050 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_029791_010 Hb_029791_010 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160 Hb_000392_540 Hb_000392_540 Hb_011224_150--Hb_000392_540 Hb_000080_100 Hb_000080_100 Hb_011224_150--Hb_000080_100 Hb_002890_110 Hb_002890_110 Hb_011224_150--Hb_002890_110 Hb_011224_150--Hb_000856_030 Hb_000367_080 Hb_000367_080 Hb_011224_150--Hb_000367_080 Hb_000009_250 Hb_000009_250 Hb_011224_150--Hb_000009_250 Hb_000457_120 Hb_000457_120 Hb_000928_200--Hb_000457_120 Hb_000928_200--Hb_000317_170 Hb_005305_040 Hb_005305_040 Hb_000928_200--Hb_005305_040 Hb_000928_200--Hb_000856_030 Hb_000030_230 Hb_000030_230 Hb_000928_200--Hb_000030_230 Hb_000928_200--Hb_000307_060 Hb_034688_030 Hb_034688_030 Hb_003126_120--Hb_034688_030 Hb_002000_100 Hb_002000_100 Hb_003126_120--Hb_002000_100 Hb_022693_090 Hb_022693_090 Hb_003126_120--Hb_022693_090 Hb_011314_010 Hb_011314_010 Hb_003126_120--Hb_011314_010 Hb_001360_020 Hb_001360_020 Hb_003126_120--Hb_001360_020 Hb_000367_320 Hb_000367_320 Hb_003126_120--Hb_000367_320 Hb_004785_170 Hb_004785_170 Hb_011985_020--Hb_004785_170 Hb_000816_150 Hb_000816_150 Hb_011985_020--Hb_000816_150 Hb_008948_010 Hb_008948_010 Hb_011985_020--Hb_008948_010 Hb_017700_030 Hb_017700_030 Hb_011985_020--Hb_017700_030 Hb_004450_090 Hb_004450_090 Hb_011985_020--Hb_004450_090 Hb_114733_010 Hb_114733_010 Hb_011985_020--Hb_114733_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.277445 6.4434 0.838871 22.0599 0 0.025106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195959 0.154087 0.372464 1.39173 7.54479

CAGE analysis