Hb_000172_620

Information

Type -
Description -
Location Contig172: 687462-690432
Sequence    

Annotation

kegg
ID csv:101215079
description uncharacterized LOC101215079
nr
ID CAN70361.1
description hypothetical protein VITISV_033646 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BN86
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033646 PE=4 SV=1
Gene Ontology
ID GO:0043229
description retrotransposon expressed

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_620 0.0 - - hypothetical protein VITISV_033646 [Vitis vinifera]
2 Hb_158144_020 0.1896226758 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
3 Hb_006925_030 0.1967813289 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
4 Hb_000710_160 0.2036647621 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_079526_010 0.2043149953 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]
6 Hb_006970_010 0.2046533758 - - lipoxygenase, putative [Ricinus communis]
7 Hb_000667_140 0.2083286347 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
8 Hb_001377_210 0.2108529475 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_000914_190 0.211095432 - - xanthine dehydrogenase, putative [Ricinus communis]
10 Hb_001155_020 0.214102495 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
11 Hb_007037_010 0.2145303724 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
12 Hb_000157_110 0.2170172404 - - hypothetical protein Csa_6G439410 [Cucumis sativus]
13 Hb_024399_020 0.2177430954 - - electron transporter, putative [Ricinus communis]
14 Hb_168031_020 0.2183639161 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
15 Hb_000038_020 0.2191936307 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
16 Hb_000699_080 0.2193675359 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
17 Hb_002686_060 0.2232392593 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000359_070 0.2250229142 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
19 Hb_005332_150 0.2253879752 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
20 Hb_000254_120 0.23076164 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000172_620 Hb_000172_620 Hb_158144_020 Hb_158144_020 Hb_000172_620--Hb_158144_020 Hb_006925_030 Hb_006925_030 Hb_000172_620--Hb_006925_030 Hb_000710_160 Hb_000710_160 Hb_000172_620--Hb_000710_160 Hb_079526_010 Hb_079526_010 Hb_000172_620--Hb_079526_010 Hb_006970_010 Hb_006970_010 Hb_000172_620--Hb_006970_010 Hb_000667_140 Hb_000667_140 Hb_000172_620--Hb_000667_140 Hb_000058_080 Hb_000058_080 Hb_158144_020--Hb_000058_080 Hb_000890_110 Hb_000890_110 Hb_158144_020--Hb_000890_110 Hb_000189_250 Hb_000189_250 Hb_158144_020--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_158144_020--Hb_000640_260 Hb_000402_170 Hb_000402_170 Hb_158144_020--Hb_000402_170 Hb_166127_030 Hb_166127_030 Hb_158144_020--Hb_166127_030 Hb_000699_080 Hb_000699_080 Hb_006925_030--Hb_000699_080 Hb_000359_070 Hb_000359_070 Hb_006925_030--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006925_030--Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_006925_030--Hb_011900_020 Hb_002686_060 Hb_002686_060 Hb_006925_030--Hb_002686_060 Hb_073490_010 Hb_073490_010 Hb_006925_030--Hb_073490_010 Hb_003746_020 Hb_003746_020 Hb_000710_160--Hb_003746_020 Hb_062192_060 Hb_062192_060 Hb_000710_160--Hb_062192_060 Hb_088080_030 Hb_088080_030 Hb_000710_160--Hb_088080_030 Hb_000710_160--Hb_002686_060 Hb_000710_160--Hb_000699_080 Hb_000920_020 Hb_000920_020 Hb_000710_160--Hb_000920_020 Hb_028960_010 Hb_028960_010 Hb_079526_010--Hb_028960_010 Hb_079526_010--Hb_000359_070 Hb_012940_020 Hb_012940_020 Hb_079526_010--Hb_012940_020 Hb_003336_020 Hb_003336_020 Hb_079526_010--Hb_003336_020 Hb_156850_020 Hb_156850_020 Hb_079526_010--Hb_156850_020 Hb_054865_040 Hb_054865_040 Hb_079526_010--Hb_054865_040 Hb_000914_190 Hb_000914_190 Hb_006970_010--Hb_000914_190 Hb_139365_010 Hb_139365_010 Hb_006970_010--Hb_139365_010 Hb_027654_010 Hb_027654_010 Hb_006970_010--Hb_027654_010 Hb_015817_010 Hb_015817_010 Hb_006970_010--Hb_015817_010 Hb_004242_200 Hb_004242_200 Hb_006970_010--Hb_004242_200 Hb_001699_020 Hb_001699_020 Hb_006970_010--Hb_001699_020 Hb_000038_020 Hb_000038_020 Hb_000667_140--Hb_000038_020 Hb_002304_180 Hb_002304_180 Hb_000667_140--Hb_002304_180 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_003494_030 Hb_003494_030 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000667_140--Hb_000359_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0129124 0.0106831 0.156284 0.0203913 0.0120917 0.0497928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0231314 0.043544 0.101493 0.630438

CAGE analysis