Hb_000160_080

Information

Type transcription factor
Description TF Family: LIM
Location Contig160: 75146-76388
Sequence    

Annotation

kegg
ID tcc:TCM_016218
description GATA type zinc finger transcription factor family protein, putative
nr
ID XP_012086948.1
description PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
swissprot
ID Q500W4
description LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1
trembl
ID A0A067JNK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20623 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14308: 73677-76613 , PASA_asmbl_14310: 75322-75511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_080 0.0 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
2 Hb_000230_250 0.1529575178 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
3 Hb_131719_010 0.1751459734 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
4 Hb_010180_050 0.182032255 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
5 Hb_000072_240 0.1917138052 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
6 Hb_002799_060 0.1943332028 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
7 Hb_110252_010 0.1964676832 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
8 Hb_008887_030 0.197017772 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
9 Hb_002818_160 0.1970371074 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
10 Hb_002307_120 0.2004322933 - - scab resistance family protein [Populus trichocarpa]
11 Hb_000334_010 0.2042789376 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_145331_010 0.208335497 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
13 Hb_004109_270 0.2096295883 transcription factor TF Family: NAC transcription activator NAC1 family protein [Populus trichocarpa]
14 Hb_004176_090 0.2096812572 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
15 Hb_005337_140 0.2100200223 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
16 Hb_004880_120 0.2102274393 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
17 Hb_019863_050 0.2119375299 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
18 Hb_003106_250 0.2127733844 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
19 Hb_000069_500 0.213826287 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
20 Hb_007253_030 0.2150601752 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_000160_080 Hb_000160_080 Hb_000230_250 Hb_000230_250 Hb_000160_080--Hb_000230_250 Hb_131719_010 Hb_131719_010 Hb_000160_080--Hb_131719_010 Hb_010180_050 Hb_010180_050 Hb_000160_080--Hb_010180_050 Hb_000072_240 Hb_000072_240 Hb_000160_080--Hb_000072_240 Hb_002799_060 Hb_002799_060 Hb_000160_080--Hb_002799_060 Hb_110252_010 Hb_110252_010 Hb_000160_080--Hb_110252_010 Hb_004880_120 Hb_004880_120 Hb_000230_250--Hb_004880_120 Hb_005772_020 Hb_005772_020 Hb_000230_250--Hb_005772_020 Hb_010175_050 Hb_010175_050 Hb_000230_250--Hb_010175_050 Hb_000230_250--Hb_010180_050 Hb_004007_210 Hb_004007_210 Hb_000230_250--Hb_004007_210 Hb_000032_590 Hb_000032_590 Hb_000230_250--Hb_000032_590 Hb_001040_090 Hb_001040_090 Hb_131719_010--Hb_001040_090 Hb_001953_110 Hb_001953_110 Hb_131719_010--Hb_001953_110 Hb_003349_020 Hb_003349_020 Hb_131719_010--Hb_003349_020 Hb_003970_010 Hb_003970_010 Hb_131719_010--Hb_003970_010 Hb_002818_160 Hb_002818_160 Hb_131719_010--Hb_002818_160 Hb_135714_010 Hb_135714_010 Hb_131719_010--Hb_135714_010 Hb_010180_050--Hb_000072_240 Hb_000594_150 Hb_000594_150 Hb_010180_050--Hb_000594_150 Hb_002999_130 Hb_002999_130 Hb_010180_050--Hb_002999_130 Hb_005054_320 Hb_005054_320 Hb_010180_050--Hb_005054_320 Hb_003106_240 Hb_003106_240 Hb_010180_050--Hb_003106_240 Hb_000072_240--Hb_000594_150 Hb_004976_080 Hb_004976_080 Hb_000072_240--Hb_004976_080 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_003126_010 Hb_003126_010 Hb_000072_240--Hb_003126_010 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020 Hb_001257_110 Hb_001257_110 Hb_002799_060--Hb_001257_110 Hb_007253_030 Hb_007253_030 Hb_002799_060--Hb_007253_030 Hb_000334_010 Hb_000334_010 Hb_002799_060--Hb_000334_010 Hb_001775_100 Hb_001775_100 Hb_002799_060--Hb_001775_100 Hb_001604_100 Hb_001604_100 Hb_002799_060--Hb_001604_100 Hb_031069_040 Hb_031069_040 Hb_002799_060--Hb_031069_040 Hb_005015_020 Hb_005015_020 Hb_110252_010--Hb_005015_020 Hb_173660_010 Hb_173660_010 Hb_110252_010--Hb_173660_010 Hb_000069_500 Hb_000069_500 Hb_110252_010--Hb_000069_500 Hb_024066_040 Hb_024066_040 Hb_110252_010--Hb_024066_040 Hb_005288_180 Hb_005288_180 Hb_110252_010--Hb_005288_180 Hb_000136_020 Hb_000136_020 Hb_110252_010--Hb_000136_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.349708 5.72907 6.40369 0.699874 0.301148 0.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174658 0.0686461 0.121699 0 9.43714

CAGE analysis