Hb_000007_420

Information

Type -
Description -
Location Contig7: 393267-393737
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11070g
description POPTRDRAFT_765976; hypothetical protein
nr
ID XP_012081991.1
description PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HIU3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s11070g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54768: 388385-392448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_420 0.0 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
2 Hb_000540_200 0.121081687 - - Uncharacterized protein TCM_041994 [Theobroma cacao]
3 Hb_000753_170 0.1753300429 - - conserved hypothetical protein [Ricinus communis]
4 Hb_029432_010 0.1797070094 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_000349_250 0.1801078293 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
6 Hb_004223_080 0.1849782021 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_136441_010 0.1862072266 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
8 Hb_001638_120 0.1869047823 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
9 Hb_000049_030 0.1939777857 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000061_430 0.1975329126 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029262_010 0.1978148862 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
12 Hb_001025_140 0.2015799331 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
13 Hb_003767_030 0.2040315782 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
14 Hb_071674_010 0.2043091877 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
15 Hb_010288_030 0.2044164871 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
16 Hb_003502_040 0.2052594545 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
17 Hb_019973_010 0.2079550495 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
18 Hb_004201_040 0.2080460027 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
19 Hb_000256_030 0.208099498 - - transferase, putative [Ricinus communis]
20 Hb_000027_160 0.2107984927 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_420 Hb_000007_420 Hb_000540_200 Hb_000540_200 Hb_000007_420--Hb_000540_200 Hb_000753_170 Hb_000753_170 Hb_000007_420--Hb_000753_170 Hb_029432_010 Hb_029432_010 Hb_000007_420--Hb_029432_010 Hb_000349_250 Hb_000349_250 Hb_000007_420--Hb_000349_250 Hb_004223_080 Hb_004223_080 Hb_000007_420--Hb_004223_080 Hb_136441_010 Hb_136441_010 Hb_000007_420--Hb_136441_010 Hb_001025_140 Hb_001025_140 Hb_000540_200--Hb_001025_140 Hb_003502_040 Hb_003502_040 Hb_000540_200--Hb_003502_040 Hb_000540_200--Hb_004223_080 Hb_001638_120 Hb_001638_120 Hb_000540_200--Hb_001638_120 Hb_000438_200 Hb_000438_200 Hb_000540_200--Hb_000438_200 Hb_001536_020 Hb_001536_020 Hb_000753_170--Hb_001536_020 Hb_001755_040 Hb_001755_040 Hb_000753_170--Hb_001755_040 Hb_004129_060 Hb_004129_060 Hb_000753_170--Hb_004129_060 Hb_001085_160 Hb_001085_160 Hb_000753_170--Hb_001085_160 Hb_007574_020 Hb_007574_020 Hb_000753_170--Hb_007574_020 Hb_000343_020 Hb_000343_020 Hb_000753_170--Hb_000343_020 Hb_001347_030 Hb_001347_030 Hb_029432_010--Hb_001347_030 Hb_000061_430 Hb_000061_430 Hb_029432_010--Hb_000061_430 Hb_029432_010--Hb_136441_010 Hb_005357_140 Hb_005357_140 Hb_029432_010--Hb_005357_140 Hb_062773_010 Hb_062773_010 Hb_029432_010--Hb_062773_010 Hb_000139_040 Hb_000139_040 Hb_029432_010--Hb_000139_040 Hb_000027_160 Hb_000027_160 Hb_000349_250--Hb_000027_160 Hb_019973_010 Hb_019973_010 Hb_000349_250--Hb_019973_010 Hb_002053_180 Hb_002053_180 Hb_000349_250--Hb_002053_180 Hb_071674_010 Hb_071674_010 Hb_000349_250--Hb_071674_010 Hb_000349_250--Hb_004223_080 Hb_001571_080 Hb_001571_080 Hb_000349_250--Hb_001571_080 Hb_000809_130 Hb_000809_130 Hb_004223_080--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_004223_080--Hb_000002_370 Hb_004223_080--Hb_001025_140 Hb_000392_170 Hb_000392_170 Hb_004223_080--Hb_000392_170 Hb_001307_020 Hb_001307_020 Hb_004223_080--Hb_001307_020 Hb_002121_030 Hb_002121_030 Hb_136441_010--Hb_002121_030 Hb_000809_220 Hb_000809_220 Hb_136441_010--Hb_000809_220 Hb_136441_010--Hb_000061_430 Hb_136441_010--Hb_062773_010 Hb_136441_010--Hb_000139_040 Hb_129956_010 Hb_129956_010 Hb_136441_010--Hb_129956_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.288725 0.65585 2.76359 1.30104 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.116514 0 0 0.644319

CAGE analysis