Hb_000540_200

Information

Type -
Description -
Location Contig540: 249004-249786
Sequence    

Annotation

kegg
ID tcc:TCM_041994
description hypothetical protein
nr
ID XP_007016641.1
description Uncharacterized protein TCM_041994 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GWQ4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_041994 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 019_I09.ab1: 248487-249103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_200 0.0 - - Uncharacterized protein TCM_041994 [Theobroma cacao]
2 Hb_000007_420 0.121081687 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
3 Hb_001025_140 0.1583332928 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
4 Hb_003502_040 0.1647260351 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
5 Hb_004223_080 0.1649146439 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_001638_120 0.1661791768 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
7 Hb_000438_200 0.1666998777 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
8 Hb_018563_010 0.1761768996 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
9 Hb_000392_170 0.1767328934 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
10 Hb_004316_020 0.1771726814 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
11 Hb_003248_030 0.1784423152 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_115962_010 0.1802212163 - - receptor serine/threonine kinase, putative [Ricinus communis]
13 Hb_000049_030 0.1831501319 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000395_120 0.1849523569 - - Stellacyanin, putative [Ricinus communis]
15 Hb_029262_010 0.1872420578 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
16 Hb_009421_090 0.1878209764 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
17 Hb_003767_030 0.188877361 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
18 Hb_164337_010 0.1889926464 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
19 Hb_167206_010 0.1927088343 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
20 Hb_006873_010 0.1927180668 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_200 Hb_000540_200 Hb_000007_420 Hb_000007_420 Hb_000540_200--Hb_000007_420 Hb_001025_140 Hb_001025_140 Hb_000540_200--Hb_001025_140 Hb_003502_040 Hb_003502_040 Hb_000540_200--Hb_003502_040 Hb_004223_080 Hb_004223_080 Hb_000540_200--Hb_004223_080 Hb_001638_120 Hb_001638_120 Hb_000540_200--Hb_001638_120 Hb_000438_200 Hb_000438_200 Hb_000540_200--Hb_000438_200 Hb_000753_170 Hb_000753_170 Hb_000007_420--Hb_000753_170 Hb_029432_010 Hb_029432_010 Hb_000007_420--Hb_029432_010 Hb_000349_250 Hb_000349_250 Hb_000007_420--Hb_000349_250 Hb_000007_420--Hb_004223_080 Hb_136441_010 Hb_136441_010 Hb_000007_420--Hb_136441_010 Hb_001025_140--Hb_004223_080 Hb_001025_140--Hb_000438_200 Hb_000059_030 Hb_000059_030 Hb_001025_140--Hb_000059_030 Hb_115962_010 Hb_115962_010 Hb_001025_140--Hb_115962_010 Hb_001025_140--Hb_001638_120 Hb_000049_030 Hb_000049_030 Hb_001025_140--Hb_000049_030 Hb_003248_030 Hb_003248_030 Hb_003502_040--Hb_003248_030 Hb_018563_010 Hb_018563_010 Hb_003502_040--Hb_018563_010 Hb_029262_010 Hb_029262_010 Hb_003502_040--Hb_029262_010 Hb_004316_020 Hb_004316_020 Hb_003502_040--Hb_004316_020 Hb_003502_040--Hb_000438_200 Hb_005694_170 Hb_005694_170 Hb_003502_040--Hb_005694_170 Hb_000809_130 Hb_000809_130 Hb_004223_080--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_004223_080--Hb_000002_370 Hb_000392_170 Hb_000392_170 Hb_004223_080--Hb_000392_170 Hb_004223_080--Hb_000349_250 Hb_001307_020 Hb_001307_020 Hb_004223_080--Hb_001307_020 Hb_011918_030 Hb_011918_030 Hb_001638_120--Hb_011918_030 Hb_001638_120--Hb_004223_080 Hb_003688_220 Hb_003688_220 Hb_001638_120--Hb_003688_220 Hb_000134_260 Hb_000134_260 Hb_001638_120--Hb_000134_260 Hb_107078_010 Hb_107078_010 Hb_001638_120--Hb_107078_010 Hb_000438_200--Hb_115962_010 Hb_000438_200--Hb_018563_010 Hb_000438_200--Hb_000049_030 Hb_012496_020 Hb_012496_020 Hb_000438_200--Hb_012496_020 Hb_167206_010 Hb_167206_010 Hb_000438_200--Hb_167206_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.698055 2.40131 7.55667 3.72993 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.22264

CAGE analysis