Hb_143629_100

Information

Type -
Description -
Location Contig143629: 68380-74562
Sequence    

Annotation

kegg
ID rcu:RCOM_1437130
description phytochrome A, putative
nr
ID XP_012088799.1
description PREDICTED: phytochrome A [Jatropha curcas]
swissprot
ID O49934
description Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1
trembl
ID A0A067JKI6
description Phytochrome OS=Jatropha curcas GN=JCGZ_23151 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phytochrome a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11494: 68650-74647 , PASA_asmbl_11495: 68650-74647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_100 0.0 - - PREDICTED: phytochrome A [Jatropha curcas]
2 Hb_000260_660 0.0949507353 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000120_820 0.1008361526 - - dihydrodipicolinate synthase, putative [Ricinus communis]
4 Hb_019280_010 0.1025837471 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
5 Hb_000327_250 0.1068249728 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
6 Hb_012286_040 0.1074544964 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
7 Hb_001642_070 0.1077779471 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
8 Hb_017387_010 0.1081110264 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
9 Hb_127743_010 0.1085477095 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
10 Hb_002307_280 0.1095502564 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
11 Hb_011287_010 0.1096753898 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_001167_050 0.1121884004 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
13 Hb_005074_020 0.1125662019 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
14 Hb_001434_080 0.1136487771 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
15 Hb_016347_010 0.1144922452 - - protein transporter, putative [Ricinus communis]
16 Hb_003776_060 0.1148767149 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
17 Hb_016172_030 0.1157187867 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
18 Hb_031527_030 0.1157434609 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
19 Hb_005663_110 0.1160297507 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
20 Hb_003544_030 0.116542732 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]

Gene co-expression network

sample Hb_143629_100 Hb_143629_100 Hb_000260_660 Hb_000260_660 Hb_143629_100--Hb_000260_660 Hb_000120_820 Hb_000120_820 Hb_143629_100--Hb_000120_820 Hb_019280_010 Hb_019280_010 Hb_143629_100--Hb_019280_010 Hb_000327_250 Hb_000327_250 Hb_143629_100--Hb_000327_250 Hb_012286_040 Hb_012286_040 Hb_143629_100--Hb_012286_040 Hb_001642_070 Hb_001642_070 Hb_143629_100--Hb_001642_070 Hb_002217_220 Hb_002217_220 Hb_000260_660--Hb_002217_220 Hb_007765_030 Hb_007765_030 Hb_000260_660--Hb_007765_030 Hb_083799_010 Hb_083799_010 Hb_000260_660--Hb_083799_010 Hb_009615_160 Hb_009615_160 Hb_000260_660--Hb_009615_160 Hb_005074_020 Hb_005074_020 Hb_000260_660--Hb_005074_020 Hb_006006_040 Hb_006006_040 Hb_000260_660--Hb_006006_040 Hb_007382_120 Hb_007382_120 Hb_000120_820--Hb_007382_120 Hb_127743_010 Hb_127743_010 Hb_000120_820--Hb_127743_010 Hb_000521_330 Hb_000521_330 Hb_000120_820--Hb_000521_330 Hb_000920_300 Hb_000920_300 Hb_000120_820--Hb_000920_300 Hb_000631_120 Hb_000631_120 Hb_000120_820--Hb_000631_120 Hb_004934_050 Hb_004934_050 Hb_000120_820--Hb_004934_050 Hb_004450_070 Hb_004450_070 Hb_019280_010--Hb_004450_070 Hb_103684_010 Hb_103684_010 Hb_019280_010--Hb_103684_010 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_000237_050 Hb_000237_050 Hb_019280_010--Hb_000237_050 Hb_004677_050 Hb_004677_050 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450 Hb_003544_030 Hb_003544_030 Hb_000327_250--Hb_003544_030 Hb_016347_010 Hb_016347_010 Hb_000327_250--Hb_016347_010 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_021576_010 Hb_021576_010 Hb_000327_250--Hb_021576_010 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_000003_100 Hb_000003_100 Hb_012286_040--Hb_000003_100 Hb_002890_130 Hb_002890_130 Hb_012286_040--Hb_002890_130 Hb_012092_060 Hb_012092_060 Hb_012286_040--Hb_012092_060 Hb_001642_070--Hb_004450_070 Hb_001642_070--Hb_016347_010 Hb_001642_070--Hb_000327_250 Hb_001642_070--Hb_019280_010 Hb_000363_040 Hb_000363_040 Hb_001642_070--Hb_000363_040 Hb_000209_100 Hb_000209_100 Hb_001642_070--Hb_000209_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66189 8.7284 4.68903 9.45535 3.97727 4.5475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51954 6.17846 4.54694 11.3135 6.21284

CAGE analysis