Hb_138842_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig138842: 1029-6207
Sequence    

Annotation

kegg
ID rcu:RCOM_0333030
description ethylene receptor, putative (EC:2.7.13.3)
nr
ID XP_012077870.1
description PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
swissprot
ID Q9ZWL6
description Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1
trembl
ID B9T4T3
description Ethylene receptor, putative OS=Ricinus communis GN=RCOM_0333030 PE=4 SV=1
Gene Ontology
ID GO:0005789
description signal transduction histidine hybrid- ethylene sensor isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138842_010 0.0 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
2 Hb_001545_200 0.0823578525 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
3 Hb_001006_330 0.0848985875 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
4 Hb_004627_060 0.090870625 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
5 Hb_001143_250 0.0922928522 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
6 Hb_000160_350 0.0939269951 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
7 Hb_000664_070 0.095560329 - - PREDICTED: protein cereblon [Jatropha curcas]
8 Hb_004055_150 0.0962927185 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001799_050 0.0965620742 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
10 Hb_000640_310 0.0974348393 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
11 Hb_140049_030 0.0974680544 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
12 Hb_000009_090 0.1001194323 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
13 Hb_005965_030 0.1004940359 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
14 Hb_001486_160 0.1005825984 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
15 Hb_002835_230 0.1010963131 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_001953_150 0.1013352181 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
17 Hb_032264_060 0.1021775321 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
18 Hb_001369_130 0.1024388168 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
19 Hb_000975_040 0.1027722765 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
20 Hb_027760_080 0.1032770559 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_138842_010 Hb_138842_010 Hb_001545_200 Hb_001545_200 Hb_138842_010--Hb_001545_200 Hb_001006_330 Hb_001006_330 Hb_138842_010--Hb_001006_330 Hb_004627_060 Hb_004627_060 Hb_138842_010--Hb_004627_060 Hb_001143_250 Hb_001143_250 Hb_138842_010--Hb_001143_250 Hb_000160_350 Hb_000160_350 Hb_138842_010--Hb_000160_350 Hb_000664_070 Hb_000664_070 Hb_138842_010--Hb_000664_070 Hb_001828_160 Hb_001828_160 Hb_001545_200--Hb_001828_160 Hb_140049_030 Hb_140049_030 Hb_001545_200--Hb_140049_030 Hb_021422_010 Hb_021422_010 Hb_001545_200--Hb_021422_010 Hb_002157_260 Hb_002157_260 Hb_001545_200--Hb_002157_260 Hb_005332_020 Hb_005332_020 Hb_001545_200--Hb_005332_020 Hb_001307_080 Hb_001307_080 Hb_001545_200--Hb_001307_080 Hb_000696_230 Hb_000696_230 Hb_001006_330--Hb_000696_230 Hb_000011_100 Hb_000011_100 Hb_001006_330--Hb_000011_100 Hb_001821_160 Hb_001821_160 Hb_001006_330--Hb_001821_160 Hb_000441_120 Hb_000441_120 Hb_001006_330--Hb_000441_120 Hb_000816_250 Hb_000816_250 Hb_001006_330--Hb_000816_250 Hb_000922_360 Hb_000922_360 Hb_001006_330--Hb_000922_360 Hb_000088_130 Hb_000088_130 Hb_004627_060--Hb_000088_130 Hb_002107_070 Hb_002107_070 Hb_004627_060--Hb_002107_070 Hb_000856_140 Hb_000856_140 Hb_004627_060--Hb_000856_140 Hb_104061_020 Hb_104061_020 Hb_004627_060--Hb_104061_020 Hb_007635_030 Hb_007635_030 Hb_004627_060--Hb_007635_030 Hb_002329_040 Hb_002329_040 Hb_004627_060--Hb_002329_040 Hb_000418_140 Hb_000418_140 Hb_001143_250--Hb_000418_140 Hb_003633_070 Hb_003633_070 Hb_001143_250--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_001143_250--Hb_001799_050 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000771_180 Hb_000771_180 Hb_000160_350--Hb_000771_180 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060 Hb_000594_040 Hb_000594_040 Hb_000664_070--Hb_000594_040 Hb_008147_040 Hb_008147_040 Hb_000664_070--Hb_008147_040 Hb_000664_070--Hb_000771_180 Hb_000664_070--Hb_000640_310 Hb_002783_310 Hb_002783_310 Hb_000664_070--Hb_002783_310 Hb_000664_070--Hb_000160_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.1486 33.4524 28.1128 16.1767 43.5426 22.8932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.756 21.3777 23.194 32.3667 23.2978

CAGE analysis