Hb_110558_020

Information

Type -
Description -
Location Contig110558: 10202-10498
Sequence    

Annotation

kegg
ID rcu:RCOM_0211550
description hypothetical protein
nr
ID XP_012081915.1
description PREDICTED: uncharacterized protein LOC105641876 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KB98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19258 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110558_020 0.0 - - PREDICTED: uncharacterized protein LOC105641876 [Jatropha curcas]
2 Hb_004361_060 0.2086001064 - - PREDICTED: uncharacterized protein LOC105636705 [Jatropha curcas]
3 Hb_007576_140 0.2108414405 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
4 Hb_000679_110 0.2175633291 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
5 Hb_000737_010 0.2305564747 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
6 Hb_001195_140 0.2340665884 - - PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
7 Hb_001168_070 0.2348825845 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
8 Hb_086639_100 0.235062136 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105646787 [Jatropha curcas]
9 Hb_007123_080 0.2355988585 - - big map kinase/bmk, putative [Ricinus communis]
10 Hb_000665_070 0.2356185121 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
11 Hb_002010_090 0.2362808051 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
12 Hb_004577_010 0.2374313299 - - PREDICTED: transmembrane protein 45A [Prunus mume]
13 Hb_177321_040 0.2386611053 - - hypothetical protein JCGZ_06328 [Jatropha curcas]
14 Hb_000567_090 0.2396165561 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
15 Hb_001123_220 0.2400052477 - - -
16 Hb_001009_140 0.2406352511 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
17 Hb_000406_090 0.240684935 - - unknown [Populus trichocarpa]
18 Hb_002235_050 0.2411648025 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
19 Hb_003226_090 0.2412059457 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
20 Hb_003659_010 0.2417591476 - - aldo/keto reductase AKR [Manihot esculenta]

Gene co-expression network

sample Hb_110558_020 Hb_110558_020 Hb_004361_060 Hb_004361_060 Hb_110558_020--Hb_004361_060 Hb_007576_140 Hb_007576_140 Hb_110558_020--Hb_007576_140 Hb_000679_110 Hb_000679_110 Hb_110558_020--Hb_000679_110 Hb_000737_010 Hb_000737_010 Hb_110558_020--Hb_000737_010 Hb_001195_140 Hb_001195_140 Hb_110558_020--Hb_001195_140 Hb_001168_070 Hb_001168_070 Hb_110558_020--Hb_001168_070 Hb_004361_060--Hb_001168_070 Hb_004577_010 Hb_004577_010 Hb_004361_060--Hb_004577_010 Hb_080147_020 Hb_080147_020 Hb_004361_060--Hb_080147_020 Hb_001663_130 Hb_001663_130 Hb_004361_060--Hb_001663_130 Hb_002249_170 Hb_002249_170 Hb_004361_060--Hb_002249_170 Hb_000098_180 Hb_000098_180 Hb_004361_060--Hb_000098_180 Hb_001195_220 Hb_001195_220 Hb_007576_140--Hb_001195_220 Hb_003659_010 Hb_003659_010 Hb_007576_140--Hb_003659_010 Hb_007123_080 Hb_007123_080 Hb_007576_140--Hb_007123_080 Hb_007576_140--Hb_000679_110 Hb_025787_010 Hb_025787_010 Hb_007576_140--Hb_025787_010 Hb_000567_090 Hb_000567_090 Hb_007576_140--Hb_000567_090 Hb_000679_110--Hb_001195_220 Hb_002235_050 Hb_002235_050 Hb_000679_110--Hb_002235_050 Hb_010872_050 Hb_010872_050 Hb_000679_110--Hb_010872_050 Hb_129204_020 Hb_129204_020 Hb_000679_110--Hb_129204_020 Hb_000679_110--Hb_003659_010 Hb_000438_010 Hb_000438_010 Hb_000737_010--Hb_000438_010 Hb_007575_030 Hb_007575_030 Hb_000737_010--Hb_007575_030 Hb_000165_070 Hb_000165_070 Hb_000737_010--Hb_000165_070 Hb_000791_050 Hb_000791_050 Hb_000737_010--Hb_000791_050 Hb_004096_220 Hb_004096_220 Hb_000737_010--Hb_004096_220 Hb_000936_090 Hb_000936_090 Hb_000737_010--Hb_000936_090 Hb_001840_110 Hb_001840_110 Hb_001195_140--Hb_001840_110 Hb_083078_010 Hb_083078_010 Hb_001195_140--Hb_083078_010 Hb_000161_240 Hb_000161_240 Hb_001195_140--Hb_000161_240 Hb_004064_060 Hb_004064_060 Hb_001195_140--Hb_004064_060 Hb_001205_180 Hb_001205_180 Hb_001195_140--Hb_001205_180 Hb_001776_010 Hb_001776_010 Hb_001195_140--Hb_001776_010 Hb_001168_070--Hb_004577_010 Hb_000445_210 Hb_000445_210 Hb_001168_070--Hb_000445_210 Hb_001168_070--Hb_002249_170 Hb_001168_070--Hb_080147_020 Hb_000086_640 Hb_000086_640 Hb_001168_070--Hb_000086_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.9161 8.26912 25.4143 5.67599 1.56172 1.53893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383959 5.74784 0 16.8689 10.6801

CAGE analysis