Hb_013420_080

Information

Type -
Description -
Location Contig13420: 13248-14323
Sequence    

Annotation

kegg
ID rcu:RCOM_2058790
description hypothetical protein
nr
ID XP_002535138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TA69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2058790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011161_090 0.1481078537 - - -
3 Hb_002685_220 0.1559307545 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
4 Hb_006040_170 0.1565331969 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
5 Hb_060198_010 0.1583442112 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_001976_020 0.1617214669 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003266_010 0.1744784449 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
8 Hb_005329_030 0.1752064158 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
9 Hb_009222_080 0.1803206558 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
10 Hb_001221_470 0.181884502 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
11 Hb_003488_040 0.1819904004 transcription factor TF Family: NF-YB nuclear transcription factor YB7 [Populus nigra x Populus x canadensis]
12 Hb_090361_010 0.1822976574 - - amino acid transporter, putative [Ricinus communis]
13 Hb_001737_040 0.1824683942 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
14 Hb_143629_200 0.1831682126 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
15 Hb_002095_020 0.1859683833 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
16 Hb_000959_010 0.1876972393 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
17 Hb_003147_040 0.1896727895 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
18 Hb_001486_100 0.1903105242 - - tubulin alpha chain, putative [Ricinus communis]
19 Hb_002217_360 0.1915031079 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
20 Hb_002495_030 0.1925226554 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_013420_080 Hb_013420_080 Hb_011161_090 Hb_011161_090 Hb_013420_080--Hb_011161_090 Hb_002685_220 Hb_002685_220 Hb_013420_080--Hb_002685_220 Hb_006040_170 Hb_006040_170 Hb_013420_080--Hb_006040_170 Hb_060198_010 Hb_060198_010 Hb_013420_080--Hb_060198_010 Hb_001976_020 Hb_001976_020 Hb_013420_080--Hb_001976_020 Hb_003266_010 Hb_003266_010 Hb_013420_080--Hb_003266_010 Hb_004204_220 Hb_004204_220 Hb_011161_090--Hb_004204_220 Hb_011161_090--Hb_003266_010 Hb_002095_020 Hb_002095_020 Hb_011161_090--Hb_002095_020 Hb_001629_050 Hb_001629_050 Hb_011161_090--Hb_001629_050 Hb_003858_060 Hb_003858_060 Hb_011161_090--Hb_003858_060 Hb_005723_090 Hb_005723_090 Hb_011161_090--Hb_005723_090 Hb_009222_080 Hb_009222_080 Hb_002685_220--Hb_009222_080 Hb_002097_080 Hb_002097_080 Hb_002685_220--Hb_002097_080 Hb_000107_550 Hb_000107_550 Hb_002685_220--Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_002685_220--Hb_002740_100 Hb_002495_030 Hb_002495_030 Hb_002685_220--Hb_002495_030 Hb_002685_220--Hb_001976_020 Hb_003177_090 Hb_003177_090 Hb_006040_170--Hb_003177_090 Hb_143629_200 Hb_143629_200 Hb_006040_170--Hb_143629_200 Hb_001486_100 Hb_001486_100 Hb_006040_170--Hb_001486_100 Hb_000959_010 Hb_000959_010 Hb_006040_170--Hb_000959_010 Hb_006040_170--Hb_060198_010 Hb_002344_080 Hb_002344_080 Hb_006040_170--Hb_002344_080 Hb_000095_070 Hb_000095_070 Hb_060198_010--Hb_000095_070 Hb_002010_070 Hb_002010_070 Hb_060198_010--Hb_002010_070 Hb_060198_010--Hb_143629_200 Hb_001143_140 Hb_001143_140 Hb_060198_010--Hb_001143_140 Hb_000465_450 Hb_000465_450 Hb_060198_010--Hb_000465_450 Hb_001706_020 Hb_001706_020 Hb_060198_010--Hb_001706_020 Hb_000979_160 Hb_000979_160 Hb_001976_020--Hb_000979_160 Hb_001976_020--Hb_002097_080 Hb_098795_030 Hb_098795_030 Hb_001976_020--Hb_098795_030 Hb_000959_120 Hb_000959_120 Hb_001976_020--Hb_000959_120 Hb_007590_100 Hb_007590_100 Hb_001976_020--Hb_007590_100 Hb_000868_130 Hb_000868_130 Hb_003266_010--Hb_000868_130 Hb_003266_010--Hb_002095_020 Hb_000473_100 Hb_000473_100 Hb_003266_010--Hb_000473_100 Hb_017358_020 Hb_017358_020 Hb_003266_010--Hb_017358_020 Hb_144449_010 Hb_144449_010 Hb_003266_010--Hb_144449_010 Hb_001046_030 Hb_001046_030 Hb_003266_010--Hb_001046_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.3035 0.806805 2.8064 0 0.352736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.28623 1.04266 2.82214

CAGE analysis