Hb_011671_170

Information

Type -
Description -
Location Contig11671: 136641-140147
Sequence    

Annotation

kegg
ID rcu:RCOM_1500950
description hypothetical protein
nr
ID XP_012090767.1
description PREDICTED: protein DYAD [Jatropha curcas]
swissprot
ID Q9FGN8
description Protein DYAD OS=Arabidopsis thaliana GN=DYAD PE=1 SV=2
trembl
ID A0A067JI11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26279 PE=4 SV=1
Gene Ontology
ID GO:0007126
description protein dyad

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_170 0.0 - - PREDICTED: protein DYAD [Jatropha curcas]
2 Hb_004342_020 0.2409589554 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
3 Hb_000088_220 0.2487983246 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
4 Hb_012508_030 0.2685323646 - - PREDICTED: uncharacterized protein LOC105636284 [Jatropha curcas]
5 Hb_000962_050 0.2692132954 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
6 Hb_002102_020 0.2724387505 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
7 Hb_001238_050 0.2756006816 - - -
8 Hb_006831_100 0.2759340393 - - snRNA-activating protein complex subunit, putative [Ricinus communis]
9 Hb_019715_010 0.2818682833 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_000922_420 0.2821852847 - - glutaredoxin-1, grx1, putative [Ricinus communis]
11 Hb_004375_080 0.2829515566 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
12 Hb_006671_020 0.2832239304 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
13 Hb_032264_080 0.2850825729 - - PREDICTED: uncharacterized protein LOC105648216 [Jatropha curcas]
14 Hb_000028_070 0.285795453 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
15 Hb_001195_040 0.2864777172 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
16 Hb_010174_080 0.2874420496 - - -
17 Hb_000521_140 0.2889561115 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
18 Hb_026549_020 0.291384436 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001005_060 0.2944667999 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
20 Hb_001140_270 0.2956847611 - - hypothetical protein EUGRSUZ_E00166 [Eucalyptus grandis]

Gene co-expression network

sample Hb_011671_170 Hb_011671_170 Hb_004342_020 Hb_004342_020 Hb_011671_170--Hb_004342_020 Hb_000088_220 Hb_000088_220 Hb_011671_170--Hb_000088_220 Hb_012508_030 Hb_012508_030 Hb_011671_170--Hb_012508_030 Hb_000962_050 Hb_000962_050 Hb_011671_170--Hb_000962_050 Hb_002102_020 Hb_002102_020 Hb_011671_170--Hb_002102_020 Hb_001238_050 Hb_001238_050 Hb_011671_170--Hb_001238_050 Hb_019715_010 Hb_019715_010 Hb_004342_020--Hb_019715_010 Hb_001277_280 Hb_001277_280 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004342_020--Hb_002450_040 Hb_011249_030 Hb_011249_030 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_032264_080 Hb_032264_080 Hb_000088_220--Hb_032264_080 Hb_000369_010 Hb_000369_010 Hb_000088_220--Hb_000369_010 Hb_005725_200 Hb_005725_200 Hb_000088_220--Hb_005725_200 Hb_000088_220--Hb_004342_020 Hb_006671_020 Hb_006671_020 Hb_000088_220--Hb_006671_020 Hb_000120_250 Hb_000120_250 Hb_000088_220--Hb_000120_250 Hb_000359_020 Hb_000359_020 Hb_012508_030--Hb_000359_020 Hb_000318_190 Hb_000318_190 Hb_012508_030--Hb_000318_190 Hb_019654_100 Hb_019654_100 Hb_012508_030--Hb_019654_100 Hb_003862_050 Hb_003862_050 Hb_012508_030--Hb_003862_050 Hb_001934_030 Hb_001934_030 Hb_012508_030--Hb_001934_030 Hb_001439_150 Hb_001439_150 Hb_012508_030--Hb_001439_150 Hb_002043_050 Hb_002043_050 Hb_000962_050--Hb_002043_050 Hb_012505_010 Hb_012505_010 Hb_000962_050--Hb_012505_010 Hb_020301_040 Hb_020301_040 Hb_000962_050--Hb_020301_040 Hb_001277_070 Hb_001277_070 Hb_000962_050--Hb_001277_070 Hb_010560_020 Hb_010560_020 Hb_000962_050--Hb_010560_020 Hb_004375_140 Hb_004375_140 Hb_000962_050--Hb_004375_140 Hb_010174_080 Hb_010174_080 Hb_002102_020--Hb_010174_080 Hb_000856_190 Hb_000856_190 Hb_002102_020--Hb_000856_190 Hb_000818_010 Hb_000818_010 Hb_002102_020--Hb_000818_010 Hb_000025_030 Hb_000025_030 Hb_002102_020--Hb_000025_030 Hb_000019_150 Hb_000019_150 Hb_002102_020--Hb_000019_150 Hb_000479_150 Hb_000479_150 Hb_002102_020--Hb_000479_150 Hb_004306_070 Hb_004306_070 Hb_001238_050--Hb_004306_070 Hb_000424_250 Hb_000424_250 Hb_001238_050--Hb_000424_250 Hb_000162_040 Hb_000162_040 Hb_001238_050--Hb_000162_040 Hb_034482_020 Hb_034482_020 Hb_001238_050--Hb_034482_020 Hb_000326_040 Hb_000326_040 Hb_001238_050--Hb_000326_040 Hb_000816_130 Hb_000816_130 Hb_001238_050--Hb_000816_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0877328 0.0129187 0.213732 0.017327 0.108335 0.0279333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.017792 0.0840017 0.186804 0.0277991 0

CAGE analysis