Hb_000962_050

Information

Type -
Description -
Location Contig962: 111588-115361
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04480g
description POPTRDRAFT_576256; phosphatase 2C family protein
nr
ID XP_012087769.1
description PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
swissprot
ID Q7XUC5
description Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584300 PE=3 SV=2
trembl
ID A0A067JKX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25542 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63751: 113505-114229 , PASA_asmbl_63752: 114826-115046 , PASA_asmbl_63753: 115096-115439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000962_050 0.0 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
2 Hb_002043_050 0.1252812952 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
3 Hb_012505_010 0.1445496268 - - mak, putative [Ricinus communis]
4 Hb_020301_040 0.1457080845 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
5 Hb_001277_070 0.1508490871 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
6 Hb_010560_020 0.1522956318 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
7 Hb_004375_140 0.1529557473 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
8 Hb_048476_110 0.1531982761 - - PREDICTED: adagio protein 3 [Jatropha curcas]
9 Hb_001040_110 0.1571078705 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
10 Hb_007044_120 0.1593628927 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
11 Hb_002784_120 0.1593805282 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
12 Hb_021409_030 0.1603818633 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
13 Hb_005928_100 0.1604655579 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
14 Hb_000608_370 0.1618718256 - - acyl-carrier-protein [Triadica sebifera]
15 Hb_000175_340 0.1622513459 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
16 Hb_000059_360 0.1630768889 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
17 Hb_000155_200 0.1635724776 - - Rab7 [Hevea brasiliensis]
18 Hb_129204_030 0.1637139821 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
19 Hb_004324_070 0.1673305468 - - protein phosphatase 2C [Hevea brasiliensis]
20 Hb_000640_080 0.1686989281 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000962_050 Hb_000962_050 Hb_002043_050 Hb_002043_050 Hb_000962_050--Hb_002043_050 Hb_012505_010 Hb_012505_010 Hb_000962_050--Hb_012505_010 Hb_020301_040 Hb_020301_040 Hb_000962_050--Hb_020301_040 Hb_001277_070 Hb_001277_070 Hb_000962_050--Hb_001277_070 Hb_010560_020 Hb_010560_020 Hb_000962_050--Hb_010560_020 Hb_004375_140 Hb_004375_140 Hb_000962_050--Hb_004375_140 Hb_005928_100 Hb_005928_100 Hb_002043_050--Hb_005928_100 Hb_000120_960 Hb_000120_960 Hb_002043_050--Hb_000120_960 Hb_003994_190 Hb_003994_190 Hb_002043_050--Hb_003994_190 Hb_001279_340 Hb_001279_340 Hb_002043_050--Hb_001279_340 Hb_010407_180 Hb_010407_180 Hb_002043_050--Hb_010407_180 Hb_000155_200 Hb_000155_200 Hb_002043_050--Hb_000155_200 Hb_012505_010--Hb_001277_070 Hb_012505_010--Hb_004375_140 Hb_129204_030 Hb_129204_030 Hb_012505_010--Hb_129204_030 Hb_000240_090 Hb_000240_090 Hb_012505_010--Hb_000240_090 Hb_000608_370 Hb_000608_370 Hb_012505_010--Hb_000608_370 Hb_001140_060 Hb_001140_060 Hb_012505_010--Hb_001140_060 Hb_002876_120 Hb_002876_120 Hb_020301_040--Hb_002876_120 Hb_003579_030 Hb_003579_030 Hb_020301_040--Hb_003579_030 Hb_000975_300 Hb_000975_300 Hb_020301_040--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_020301_040--Hb_007594_120 Hb_020301_040--Hb_004375_140 Hb_021409_030 Hb_021409_030 Hb_020301_040--Hb_021409_030 Hb_001277_070--Hb_000608_370 Hb_011224_110 Hb_011224_110 Hb_001277_070--Hb_011224_110 Hb_001277_070--Hb_129204_030 Hb_003581_150 Hb_003581_150 Hb_001277_070--Hb_003581_150 Hb_153112_020 Hb_153112_020 Hb_001277_070--Hb_153112_020 Hb_004453_170 Hb_004453_170 Hb_010560_020--Hb_004453_170 Hb_000367_160 Hb_000367_160 Hb_010560_020--Hb_000367_160 Hb_000915_090 Hb_000915_090 Hb_010560_020--Hb_000915_090 Hb_000856_380 Hb_000856_380 Hb_010560_020--Hb_000856_380 Hb_010560_020--Hb_000155_200 Hb_000462_130 Hb_000462_130 Hb_010560_020--Hb_000462_130 Hb_004375_140--Hb_021409_030 Hb_000103_010 Hb_000103_010 Hb_004375_140--Hb_000103_010 Hb_001085_120 Hb_001085_120 Hb_004375_140--Hb_001085_120 Hb_004375_140--Hb_129204_030 Hb_004586_320 Hb_004586_320 Hb_004375_140--Hb_004586_320 Hb_004375_140--Hb_000608_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1635 5.61412 25.6413 8.737 11.2737 11.377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3884 35.8932 40.3443 3.53208 2.89053

CAGE analysis