Hb_011310_100

Information

Type -
Description -
Location Contig11310: 40136-41489
Sequence    

Annotation

kegg
ID cic:CICLE_v10008199mg
description hypothetical protein
nr
ID XP_006450459.1
description hypothetical protein CICLE_v10008199mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4WBH4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008199mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03906: 36372-41553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_100 0.0 - - hypothetical protein CICLE_v10008199mg [Citrus clementina]
2 Hb_001478_040 0.1066193743 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
3 Hb_004032_200 0.1096803984 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
4 Hb_000022_190 0.1212166637 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
5 Hb_007597_010 0.1262210839 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
6 Hb_006261_050 0.129874643 transcription factor TF Family: C2C2-YABBY DNA-binding protein MNB1B, putative [Ricinus communis]
7 Hb_001473_140 0.1300990109 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
8 Hb_000069_610 0.135686463 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
9 Hb_000066_150 0.1364552159 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
10 Hb_010315_020 0.1377631153 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
11 Hb_000069_570 0.1381655993 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
12 Hb_008014_040 0.1390226114 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
13 Hb_000359_190 0.1404586273 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
14 Hb_001301_270 0.1416531952 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
15 Hb_001329_250 0.1422020195 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
16 Hb_000336_020 0.1439193974 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
17 Hb_010137_060 0.144131705 - - PREDICTED: uncharacterized protein LOC105634409 [Jatropha curcas]
18 Hb_024184_010 0.1446577119 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
19 Hb_000179_190 0.1449688622 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
20 Hb_001050_050 0.1455465255 - - PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_011310_100 Hb_011310_100 Hb_001478_040 Hb_001478_040 Hb_011310_100--Hb_001478_040 Hb_004032_200 Hb_004032_200 Hb_011310_100--Hb_004032_200 Hb_000022_190 Hb_000022_190 Hb_011310_100--Hb_000022_190 Hb_007597_010 Hb_007597_010 Hb_011310_100--Hb_007597_010 Hb_006261_050 Hb_006261_050 Hb_011310_100--Hb_006261_050 Hb_001473_140 Hb_001473_140 Hb_011310_100--Hb_001473_140 Hb_001478_040--Hb_004032_200 Hb_000069_610 Hb_000069_610 Hb_001478_040--Hb_000069_610 Hb_005701_050 Hb_005701_050 Hb_001478_040--Hb_005701_050 Hb_000059_230 Hb_000059_230 Hb_001478_040--Hb_000059_230 Hb_001478_040--Hb_007597_010 Hb_170077_010 Hb_170077_010 Hb_001478_040--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_004032_200--Hb_000066_150 Hb_012055_040 Hb_012055_040 Hb_004032_200--Hb_012055_040 Hb_004032_200--Hb_000059_230 Hb_003805_040 Hb_003805_040 Hb_004032_200--Hb_003805_040 Hb_006839_010 Hb_006839_010 Hb_004032_200--Hb_006839_010 Hb_000069_570 Hb_000069_570 Hb_000022_190--Hb_000069_570 Hb_089246_010 Hb_089246_010 Hb_000022_190--Hb_089246_010 Hb_001018_090 Hb_001018_090 Hb_000022_190--Hb_001018_090 Hb_008014_040 Hb_008014_040 Hb_000022_190--Hb_008014_040 Hb_000103_340 Hb_000103_340 Hb_000022_190--Hb_000103_340 Hb_000635_090 Hb_000635_090 Hb_000022_190--Hb_000635_090 Hb_003929_070 Hb_003929_070 Hb_007597_010--Hb_003929_070 Hb_000336_020 Hb_000336_020 Hb_007597_010--Hb_000336_020 Hb_001677_200 Hb_001677_200 Hb_007597_010--Hb_001677_200 Hb_007248_030 Hb_007248_030 Hb_007597_010--Hb_007248_030 Hb_044486_020 Hb_044486_020 Hb_007597_010--Hb_044486_020 Hb_002326_040 Hb_002326_040 Hb_007597_010--Hb_002326_040 Hb_004531_150 Hb_004531_150 Hb_006261_050--Hb_004531_150 Hb_001541_150 Hb_001541_150 Hb_006261_050--Hb_001541_150 Hb_004531_100 Hb_004531_100 Hb_006261_050--Hb_004531_100 Hb_000731_200 Hb_000731_200 Hb_006261_050--Hb_000731_200 Hb_006261_050--Hb_007597_010 Hb_006261_050--Hb_000069_610 Hb_001473_140--Hb_001478_040 Hb_000836_290 Hb_000836_290 Hb_001473_140--Hb_000836_290 Hb_001473_140--Hb_000069_610 Hb_000589_110 Hb_000589_110 Hb_001473_140--Hb_000589_110 Hb_001050_050 Hb_001050_050 Hb_001473_140--Hb_001050_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12957 0.614398 0.593046 0.670164 0.352315 0.607489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0849588 0.333927 0.237365 0.299379 0.789009

CAGE analysis