Hb_007416_190

Information

Type -
Description -
Location Contig7416: 122286-125340
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28780g
description hypothetical protein
nr
ID XP_011031375.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9N676
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28780g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_190 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
2 Hb_007818_020 0.1743942014 - - predicted protein [Physcomitrella patens]
3 Hb_004570_030 0.1918926729 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011218_070 0.2164006842 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
5 Hb_003506_070 0.2171040231 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
6 Hb_002086_030 0.2192561314 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_005291_040 0.2220277619 - - PREDICTED: gamma-gliadin [Jatropha curcas]
8 Hb_026198_040 0.2255249862 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
9 Hb_040255_010 0.225758775 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
10 Hb_004440_040 0.225914839 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_011930_110 0.2264356768 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
12 Hb_011161_020 0.2266879851 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
13 Hb_005054_190 0.2272469467 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
14 Hb_000359_270 0.2274084055 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_004228_020 0.2275591268 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
16 Hb_012082_010 0.2286044129 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
17 Hb_006185_060 0.2290004557 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
18 Hb_087086_020 0.2295030142 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
19 Hb_000796_180 0.2296411687 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
20 Hb_011512_120 0.2298688971 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_190 Hb_007416_190 Hb_007818_020 Hb_007818_020 Hb_007416_190--Hb_007818_020 Hb_004570_030 Hb_004570_030 Hb_007416_190--Hb_004570_030 Hb_011218_070 Hb_011218_070 Hb_007416_190--Hb_011218_070 Hb_003506_070 Hb_003506_070 Hb_007416_190--Hb_003506_070 Hb_002086_030 Hb_002086_030 Hb_007416_190--Hb_002086_030 Hb_005291_040 Hb_005291_040 Hb_007416_190--Hb_005291_040 Hb_004228_020 Hb_004228_020 Hb_007818_020--Hb_004228_020 Hb_006663_040 Hb_006663_040 Hb_007818_020--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_007818_020--Hb_052764_060 Hb_000832_320 Hb_000832_320 Hb_007818_020--Hb_000832_320 Hb_000189_100 Hb_000189_100 Hb_007818_020--Hb_000189_100 Hb_001268_380 Hb_001268_380 Hb_007818_020--Hb_001268_380 Hb_004570_030--Hb_007818_020 Hb_011791_020 Hb_011791_020 Hb_004570_030--Hb_011791_020 Hb_004570_030--Hb_004228_020 Hb_011909_070 Hb_011909_070 Hb_004570_030--Hb_011909_070 Hb_002805_130 Hb_002805_130 Hb_004570_030--Hb_002805_130 Hb_001049_030 Hb_001049_030 Hb_011218_070--Hb_001049_030 Hb_000077_230 Hb_000077_230 Hb_011218_070--Hb_000077_230 Hb_003216_080 Hb_003216_080 Hb_011218_070--Hb_003216_080 Hb_000465_480 Hb_000465_480 Hb_011218_070--Hb_000465_480 Hb_001930_010 Hb_001930_010 Hb_011218_070--Hb_001930_010 Hb_000264_320 Hb_000264_320 Hb_011218_070--Hb_000264_320 Hb_000465_080 Hb_000465_080 Hb_003506_070--Hb_000465_080 Hb_003125_030 Hb_003125_030 Hb_003506_070--Hb_003125_030 Hb_000540_110 Hb_000540_110 Hb_003506_070--Hb_000540_110 Hb_001525_010 Hb_001525_010 Hb_003506_070--Hb_001525_010 Hb_011909_060 Hb_011909_060 Hb_003506_070--Hb_011909_060 Hb_004218_090 Hb_004218_090 Hb_003506_070--Hb_004218_090 Hb_000869_030 Hb_000869_030 Hb_002086_030--Hb_000869_030 Hb_009372_010 Hb_009372_010 Hb_002086_030--Hb_009372_010 Hb_128695_030 Hb_128695_030 Hb_002086_030--Hb_128695_030 Hb_001231_080 Hb_001231_080 Hb_002086_030--Hb_001231_080 Hb_002485_040 Hb_002485_040 Hb_002086_030--Hb_002485_040 Hb_153161_010 Hb_153161_010 Hb_002086_030--Hb_153161_010 Hb_010738_010 Hb_010738_010 Hb_005291_040--Hb_010738_010 Hb_002997_160 Hb_002997_160 Hb_005291_040--Hb_002997_160 Hb_005883_010 Hb_005883_010 Hb_005291_040--Hb_005883_010 Hb_000283_130 Hb_000283_130 Hb_005291_040--Hb_000283_130 Hb_007229_040 Hb_007229_040 Hb_005291_040--Hb_007229_040 Hb_001117_190 Hb_001117_190 Hb_005291_040--Hb_001117_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0921608 0.16644 0.0596985 0.00452145 0.0431348 0.0704817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0349054 0.0445008 0.0276918 0.049633

CAGE analysis